Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 PPIAP26-201ENST00000377951 522 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 NR1I3-208ENST00000412844 989 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AL445193.2-201ENST00000419596 620 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC096632.2-201ENST00000438139 1239 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 RNU6-775P-201ENST00000459318 96 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 RN7SL393P-201ENST00000463588 296 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC044810.1-201ENST00000480271 711 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC079921.2-201ENST00000507579 455 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC010634.1-201ENST00000513925 540 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC010442.1-201ENST00000515583 816 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 RNU6-751P-201ENST00000516382 101 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC022784.5-201ENST00000522241 437 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 LINC02424-201ENST00000548512 1264 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC026770.1-201ENST00000558994 581 ntTSL 4 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC091132.1-201ENST00000588189 547 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC012594.1-252ENST00000595011 876 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC073065.1-201ENST00000411678 2866 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 GLYATL2-201ENST00000287275 1640 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AL121985.1-201ENST00000598917 1308 ntTSL 5 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 C18orf54-206ENST00000620105 5693 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 AC007012.2-201ENST00000623206 1676 ntBASIC8.2□□□□□ -1.1
HLA-DOAP06340 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC8.2□□□□□ -1.1
HLA-DOAP06340 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC8.2□□□□□ -1.1
HLA-DOAP06340 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 CEACAM5-210ENST00000617332 2228 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 ZNF763-202ENST00000358987 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 CD46-209ENST00000367047 3089 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 CHRDL1-201ENST00000372042 1934 ntAPPRIS ALT1 TSL 2 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 ARHGAP42P4-201ENST00000549782 2934 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC019178.1-201ENST00000392337 440 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 RN7SKP146-201ENST00000410242 334 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 CDC42P6-201ENST00000421246 576 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AL596268.1-201ENST00000427910 1048 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AL031681.1-201ENST00000443304 400 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 RN7SL83P-201ENST00000468131 297 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 RN7SL216P-201ENST00000471607 298 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 RN7SL37P-201ENST00000490461 307 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 IGHVIII-13-1-201ENST00000517613 291 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC087752.2-201ENST00000521219 281 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 OR7E154P-201ENST00000525174 932 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AP006587.5-201ENST00000532033 739 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 TMEM126B-211ENST00000534341 1273 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC138207.8-204ENST00000579588 527 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC015911.3-201ENST00000592908 849 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AL390877.1-201ENST00000605704 214 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AC015819.1-201ENST00000613588 663 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 CASC19-232ENST00000641480 1244 ntBASIC8.19□□□□□ -1.1
HLA-DOAP06340 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
HLA-DOAP06340 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC8.19□□□□□ -1.1
HLA-DOAP06340 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms