RNA–Protein interactions for RNA: ENST00000557295.1

LINC00640-204, long intergenic non-protein coding RNA 640, humanhuman

TSL 5 BASIC

Gene LINC00640, Length 708 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00640-204ENST00000557295 AEBP2Q6ZN18 517 aaPredicted RBP24.7■■□□□ 1.54
LINC00640-204ENST00000557295 CHIC1Q5VXU3 224 aa23.66■■□□□ 1.38
LINC00640-204ENST00000557295 SENP3Q9H4L4 574 aaPredicted RBP21.05■□□□□ 0.96
LINC00640-204ENST00000557295 PHF23Q9BUL5 403 aaPredicted RBP20.81■□□□□ 0.92
LINC00640-204ENST00000557295 FOXD1Q16676 465 aa19.59■□□□□ 0.73
LINC00640-204ENST00000557295 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
LINC00640-204ENST00000557295 PPP6R1Q9UPN7 881 aa18.47■□□□□ 0.55
LINC00640-204ENST00000557295 ADRA2BP18089 450 aa18.42■□□□□ 0.54
LINC00640-204ENST00000557295 PIAS4Q8N2W9 510 aaPredicted RBP18.36■□□□□ 0.53
LINC00640-204ENST00000557295 MSH5O43196 834 aa18.27■□□□□ 0.52
LINC00640-204ENST00000557295 POTEDQ86YR6 584 aa17.48■□□□□ 0.39
LINC00640-204ENST00000557295 NISCHQ9Y2I1 1504 aa17.26■□□□□ 0.35
LINC00640-204ENST00000557295 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
LINC00640-204ENST00000557295 MAPK8IP2Q13387 824 aaPredicted RBP16.86■□□□□ 0.29
LINC00640-204ENST00000557295 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
LINC00640-204ENST00000557295 KCNA4P22459 653 aa16.71■□□□□ 0.27
LINC00640-204ENST00000557295 PPP4R3CPQ6ZMV5 832 aa16.68■□□□□ 0.26
LINC00640-204ENST00000557295 NCBP3Q53F19 620 aaKnown RBP16.46■□□□□ 0.23
LINC00640-204ENST00000557295 CNKSR2Q8WXI2 1034 aa16.33■□□□□ 0.2
LINC00640-204ENST00000557295 HOXD11P31277 338 aaPredicted RBP16.19■□□□□ 0.18
LINC00640-204ENST00000557295 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
LINC00640-204ENST00000557295 RNF216Q9NWF9 866 aaPredicted RBP16.13■□□□□ 0.17
LINC00640-204ENST00000557295 SLC4A1APQ9BWU0 796 aaKnown RBP16.09■□□□□ 0.17
LINC00640-204ENST00000557295 NPM3O75607 178 aaKnown RBP16.04■□□□□ 0.16
LINC00640-204ENST00000557295 DCAF8L1A6NGE4 600 aa16.03■□□□□ 0.16
LINC00640-204ENST00000557295 ABCC9O60706 1549 aa16.03■□□□□ 0.16
LINC00640-204ENST00000557295 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
LINC00640-204ENST00000557295 RNF39Q9H2S5 420 aa15.6■□□□□ 0.09
LINC00640-204ENST00000557295 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
LINC00640-204ENST00000557295 CCDC180Q9P1Z9 1646 aa15.57■□□□□ 0.08
LINC00640-204ENST00000557295 CACNB1Q02641 598 aaPredicted RBP15.55■□□□□ 0.08
LINC00640-204ENST00000557295 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
LINC00640-204ENST00000557295 C1QBPQ07021 282 aaKnown RBP15.39■□□□□ 0.05
LINC00640-204ENST00000557295 FOXD4L1Q9NU39 408 aa15.3■□□□□ 0.04
LINC00640-204ENST00000557295 ZBTB22O15209 634 aa15.29■□□□□ 0.04
LINC00640-204ENST00000557295 U3KPZ7 1027 aaPredicted RBP15.12■□□□□ 0.01
LINC00640-204ENST00000557295 SLC4A2P04920 1241 aa15.1■□□□□ 0.01
LINC00640-204ENST00000557295 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
LINC00640-204ENST00000557295 NACADO15069 1562 aa14.9□□□□□ -0.02
LINC00640-204ENST00000557295 PABPN1Q86U42 306 aaKnown RBP eCLIP14.9□□□□□ -0.02
LINC00640-204ENST00000557295 MYCNP04198 464 aaPredicted RBP14.88□□□□□ -0.03
LINC00640-204ENST00000557295 SPINK5Q9NQ38 1064 aaPredicted RBP14.84□□□□□ -0.03
LINC00640-204ENST00000557295 CAPN15O75808 1086 aa14.81□□□□□ -0.04
LINC00640-204ENST00000557295 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.78□□□□□ -0.04
LINC00640-204ENST00000557295 HNRNPUL2Q1KMD3 747 aaKnown RBP14.78□□□□□ -0.04
LINC00640-204ENST00000557295 APLP2Q06481 763 aa14.73□□□□□ -0.05
LINC00640-204ENST00000557295 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
LINC00640-204ENST00000557295 ATXN8OSP0DMR3 200 aa14.72□□□□□ -0.05
LINC00640-204ENST00000557295 SAMD1Q6SPF0 538 aaPredicted RBP14.7□□□□□ -0.06
LINC00640-204ENST00000557295 DSG3P32926 999 aa14.68□□□□□ -0.06
LINC00640-204ENST00000557295 BICRAQ9NZM4 1560 aa14.64□□□□□ -0.07
LINC00640-204ENST00000557295 MYO15BQ96JP2 1530 aa14.62□□□□□ -0.07
LINC00640-204ENST00000557295 TRHP20396 242 aaPredicted RBP14.62□□□□□ -0.07
LINC00640-204ENST00000557295 ZNF219Q9P2Y4 722 aaPredicted RBP14.61□□□□□ -0.07
LINC00640-204ENST00000557295 DNAJC5Q9H3Z4 198 aa14.52□□□□□ -0.09
LINC00640-204ENST00000557295 UNC13AQ9UPW8 1703 aa14.52□□□□□ -0.09
LINC00640-204ENST00000557295 CECR2Q9BXF3 1484 aa14.51□□□□□ -0.09
LINC00640-204ENST00000557295 SHROOM4Q9ULL8 1493 aa14.5□□□□□ -0.09
LINC00640-204ENST00000557295 ABCB7O75027 752 aa14.48□□□□□ -0.09
LINC00640-204ENST00000557295 CC2D2AQ9P2K1 1620 aa14.42□□□□□ -0.1
LINC00640-204ENST00000557295 ATF5Q9Y2D1 282 aaPredicted RBP14.34□□□□□ -0.11
LINC00640-204ENST00000557295 EIF4G1Q04637 1599 aaKnown RBP14.32□□□□□ -0.12
LINC00640-204ENST00000557295 POLA2Q14181 598 aa14.28□□□□□ -0.12
LINC00640-204ENST00000557295 DCAF1Q9Y4B6 1507 aa14.26□□□□□ -0.13
LINC00640-204ENST00000557295 FKBP8Q14318 412 aa14.23□□□□□ -0.13
LINC00640-204ENST00000557295 ZCCHC6Q5VYS8 1495 aaKnown RBP14.22□□□□□ -0.13
LINC00640-204ENST00000557295 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
LINC00640-204ENST00000557295 CUX2O14529 1486 aa14.03□□□□□ -0.16
LINC00640-204ENST00000557295 RBM42Q9BTD8 480 aaKnown RBP14.01□□□□□ -0.17
LINC00640-204ENST00000557295 ZBTB12Q9Y330 459 aaPredicted RBP14□□□□□ -0.17
LINC00640-204ENST00000557295 FBLN2P98095 1184 aa13.94□□□□□ -0.18
LINC00640-204ENST00000557295 ERCC6Q03468 1493 aa13.87□□□□□ -0.19
LINC00640-204ENST00000557295 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
LINC00640-204ENST00000557295 OSCARQ8IYS5 282 aa13.81□□□□□ -0.2
LINC00640-204ENST00000557295 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
LINC00640-204ENST00000557295 AMER1Q5JTC6 1135 aaPredicted RBP13.76□□□□□ -0.21
LINC00640-204ENST00000557295 POTEHQ6S545 545 aa13.74□□□□□ -0.21
LINC00640-204ENST00000557295 AKT1S1Q96B36 256 aa13.73□□□□□ -0.21
LINC00640-204ENST00000557295 MKRN4PQ13434 485 aaPredicted RBP13.72□□□□□ -0.21
LINC00640-204ENST00000557295 ATAD2BQ9ULI0 1458 aa13.69□□□□□ -0.22
LINC00640-204ENST00000557295 FBXO3Q9UK99 471 aa13.68□□□□□ -0.22
LINC00640-204ENST00000557295 NESP48681 1621 aa13.64□□□□□ -0.23
LINC00640-204ENST00000557295 TRIM41Q8WV44 630 aa13.64□□□□□ -0.23
LINC00640-204ENST00000557295 RTN4Q9NQC3 1192 aaKnown RBP13.64□□□□□ -0.23
LINC00640-204ENST00000557295 HMGXB3Q12766 1538 aa13.62□□□□□ -0.23
LINC00640-204ENST00000557295 CHRDL2Q6WN34 429 aa13.61□□□□□ -0.23
LINC00640-204ENST00000557295 SMARCA2P51531 1590 aa13.59□□□□□ -0.23
LINC00640-204ENST00000557295 SPDYE2BA6NHP3 402 aa13.59□□□□□ -0.23
LINC00640-204ENST00000557295 SPDYE6P0CI01 402 aa13.59□□□□□ -0.23
LINC00640-204ENST00000557295 SPDYE2Q495Y8 402 aa13.59□□□□□ -0.23
LINC00640-204ENST00000557295 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
LINC00640-204ENST00000557295 THOC2Q8NI27 1593 aaKnown RBP13.55□□□□□ -0.24
LINC00640-204ENST00000557295 BAZ1BQ9UIG0 1483 aaKnown RBP13.5□□□□□ -0.25
LINC00640-204ENST00000557295 PDS5BQ9NTI5 1447 aa13.49□□□□□ -0.25
LINC00640-204ENST00000557295 SMARCA4P51532 1647 aa13.49□□□□□ -0.25
LINC00640-204ENST00000557295 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
LINC00640-204ENST00000557295 ZNF692Q9BU19 519 aaPredicted RBP13.46□□□□□ -0.25
LINC00640-204ENST00000557295 PITPNM1O00562 1244 aa13.44□□□□□ -0.26
LINC00640-204ENST00000557295 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
LINC00640-204ENST00000557295 PEG3Q9GZU2 1588 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms