Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC5.9□□□□□ -1.46
CDX1P47902 MIR4437-201ENST00000581331 60 ntBASIC5.9□□□□□ -1.46
CDX1P47902 OR7A11P-201ENST00000597719 953 ntBASIC5.9□□□□□ -1.46
CDX1P47902 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC5.9□□□□□ -1.46
CDX1P47902 LINC00632-203ENST00000602535 723 ntTSL 5 BASIC5.9□□□□□ -1.46
CDX1P47902 IZUMO3-203ENST00000604921 743 ntAPPRIS P2 TSL 5 BASIC5.9□□□□□ -1.46
CDX1P47902 AL096855.2-201ENST00000605785 369 ntBASIC5.9□□□□□ -1.46
CDX1P47902 AL022238.3-201ENST00000609279 443 ntBASIC5.9□□□□□ -1.46
CDX1P47902 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.9□□□□□ -1.46
CDX1P47902 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC5.9□□□□□ -1.46
CDX1P47902 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC5.9□□□□□ -1.46
CDX1P47902 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CDX1P47902 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
CDX1P47902 AL161891.1-201ENST00000621575 4636 ntBASIC5.9□□□□□ -1.47
CDX1P47902 AC007993.1-201ENST00000621298 2430 ntBASIC5.9□□□□□ -1.47
CDX1P47902 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CDX1P47902 CASC19-255ENST00000641733 1385 ntBASIC5.9□□□□□ -1.47
CDX1P47902 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
CDX1P47902 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
CDX1P47902 BEST3-202ENST00000330891 3532 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
CDX1P47902 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.9□□□□□ -1.47
CDX1P47902 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.9□□□□□ -1.47
CDX1P47902 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
CDX1P47902 ELOVL5-201ENST00000304434 2827 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AC015871.3-201ENST00000618835 2261 ntBASIC5.89□□□□□ -1.47
CDX1P47902 SNORA51.7-201ENST00000384171 134 ntBASIC5.89□□□□□ -1.47
CDX1P47902 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CDX1P47902 SRI-202ENST00000394641 653 ntTSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AC092162.2-203ENST00000430460 579 ntTSL 4 BASIC5.89□□□□□ -1.47
CDX1P47902 AC091390.2-201ENST00000432573 374 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC5.89□□□□□ -1.47
CDX1P47902 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 AC234771.3-201ENST00000454984 622 ntBASIC5.89□□□□□ -1.47
CDX1P47902 TDGF1P6-201ENST00000463873 448 ntBASIC5.89□□□□□ -1.47
CDX1P47902 RN7SL332P-201ENST00000482163 254 ntBASIC5.89□□□□□ -1.47
CDX1P47902 OR2A3P-201ENST00000493774 953 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC5.89□□□□□ -1.47
CDX1P47902 AC095057.1-201ENST00000507583 168 ntBASIC5.89□□□□□ -1.47
CDX1P47902 LINC02223-203ENST00000514771 781 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 AC027541.1-201ENST00000519306 485 ntTSL 3 BASIC5.89□□□□□ -1.47
CDX1P47902 OR4A13P-201ENST00000529316 942 ntBASIC5.89□□□□□ -1.47
CDX1P47902 LINC02389-202ENST00000540024 557 ntTSL 4 BASIC5.89□□□□□ -1.47
CDX1P47902 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 ARL17A-205ENST00000573185 581 ntAPPRIS ALT2 TSL 3 BASIC5.89□□□□□ -1.47
CDX1P47902 ARL17B-206ENST00000575698 581 ntTSL 3 BASIC5.89□□□□□ -1.47
CDX1P47902 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 AC007136.1-201ENST00000589141 199 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AC016629.2-201ENST00000597341 199 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AC139792.1-201ENST00000607051 647 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 AC023310.4-201ENST00000613130 650 ntBASIC5.89□□□□□ -1.47
CDX1P47902 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC5.89□□□□□ -1.47
CDX1P47902 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AL357556.1-201ENST00000421884 1388 ntBASIC5.89□□□□□ -1.47
CDX1P47902 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 LINC01747-203ENST00000634603 1377 ntTSL 4 BASIC5.89□□□□□ -1.47
CDX1P47902 TIAL1-205ENST00000436547 1401 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 RGS6-205ENST00000406236 1476 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AL391261.1-201ENST00000555712 1479 ntBASIC5.89□□□□□ -1.47
CDX1P47902 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 VPS8-201ENST00000287546 5047 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC5.89□□□□□ -1.47
CDX1P47902 CTNNA1P1-201ENST00000515849 2728 ntBASIC5.89□□□□□ -1.47
CDX1P47902 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CDX1P47902 VEZF1P1-201ENST00000423931 1541 ntBASIC5.89□□□□□ -1.47
CDX1P47902 LEKR1-204ENST00000470811 2881 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CDX1P47902 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
CDX1P47902 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 AC053481.2-201ENST00000602493 1815 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 MYL1-201ENST00000341685 870 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 RNA5SP448-201ENST00000363151 111 ntBASIC5.88□□□□□ -1.47
CDX1P47902 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 HHLA3-203ENST00000370940 775 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 GAS8-AS1-201ENST00000408886 435 ntBASIC5.88□□□□□ -1.47
CDX1P47902 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms