Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 HSD17B7P1-201ENST00000412419 1017 ntBASIC11.35□□□□□ -0.59
CUX1P39880 PAICSP2-201ENST00000429118 1150 ntBASIC11.35□□□□□ -0.59
CUX1P39880 XXYLT1-AS2-202ENST00000447975 784 ntTSL 2 BASIC11.35□□□□□ -0.59
CUX1P39880 AC084754.1-201ENST00000463466 464 ntBASIC11.35□□□□□ -0.59
CUX1P39880 UGT2A3P7-201ENST00000510485 734 ntBASIC11.35□□□□□ -0.59
CUX1P39880 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC11.35□□□□□ -0.59
CUX1P39880 MYL2-203ENST00000548438 664 ntTSL 3 BASIC11.35□□□□□ -0.59
CUX1P39880 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC11.35□□□□□ -0.59
CUX1P39880 LINC00663-206ENST00000589910 732 ntTSL 2 BASIC11.35□□□□□ -0.59
CUX1P39880 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC11.35□□□□□ -0.59
CUX1P39880 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC11.35□□□□□ -0.59
CUX1P39880 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
CUX1P39880 ZNF175-201ENST00000262259 6535 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 BSN-201ENST00000296452 15955 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 ATP9A-201ENST00000311637 7437 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
CUX1P39880 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC11.34□□□□□ -0.59
CUX1P39880 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC11.34□□□□□ -0.59
CUX1P39880 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
CUX1P39880 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 VNN3-205ENST00000417437 1117 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC11.34□□□□□ -0.59
CUX1P39880 PNKDP1-201ENST00000435914 430 ntBASIC11.34□□□□□ -0.59
CUX1P39880 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 AL034399.1-201ENST00000451535 380 ntBASIC11.34□□□□□ -0.59
CUX1P39880 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC11.34□□□□□ -0.59
CUX1P39880 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
CUX1P39880 NANOGNBP2-201ENST00000544753 553 ntBASIC11.34□□□□□ -0.59
CUX1P39880 AC023968.1-201ENST00000560719 475 ntBASIC11.34□□□□□ -0.59
CUX1P39880 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC11.34□□□□□ -0.59
CUX1P39880 AC027243.2-201ENST00000602530 724 ntBASIC11.34□□□□□ -0.59
CUX1P39880 AC111186.1-201ENST00000604684 130 ntBASIC11.34□□□□□ -0.59
CUX1P39880 SNX18P12-201ENST00000624821 759 ntBASIC11.34□□□□□ -0.59
CUX1P39880 AC073488.9-201ENST00000631601 754 ntBASIC11.34□□□□□ -0.59
CUX1P39880 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 KALRN-201ENST00000240874 6537 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 KALRN-211ENST00000460856 6509 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
CUX1P39880 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.59
CUX1P39880 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 FAM129A-201ENST00000367511 6928 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 IGSF11-201ENST00000354673 3206 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 ERBB3-221ENST00000553131 3237 ntTSL 2 BASIC11.33□□□□□ -0.6
CUX1P39880 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 ARMCX3-207ENST00000537169 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 GC-201ENST00000273951 1972 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 YAF2-201ENST00000327791 4156 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
CUX1P39880 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
CUX1P39880 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 LYPLA1P3-201ENST00000402650 695 ntBASIC11.33□□□□□ -0.6
CUX1P39880 AL359839.1-201ENST00000451975 1160 ntBASIC11.33□□□□□ -0.6
CUX1P39880 RN7SL221P-201ENST00000466190 281 ntBASIC11.33□□□□□ -0.6
CUX1P39880 SNX18P25-201ENST00000510539 758 ntBASIC11.33□□□□□ -0.6
CUX1P39880 SNORA81.2-201ENST00000516868 170 ntBASIC11.33□□□□□ -0.6
CUX1P39880 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC11.33□□□□□ -0.6
CUX1P39880 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC11.33□□□□□ -0.6
CUX1P39880 RPL3P13-201ENST00000550415 216 ntBASIC11.33□□□□□ -0.6
CUX1P39880 APAF1-211ENST00000552268 1143 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 ULK4P1-202ENST00000565174 503 ntBASIC11.33□□□□□ -0.6
CUX1P39880 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
CUX1P39880 Z98949.1-217ENST00000609275 994 ntTSL 5 BASIC11.33□□□□□ -0.6
CUX1P39880 AC026367.2-201ENST00000610630 553 ntBASIC11.33□□□□□ -0.6
CUX1P39880 AL133230.1-201ENST00000431019 4587 ntTSL 2 BASIC11.33□□□□□ -0.6
CUX1P39880 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC11.33□□□□□ -0.6
CUX1P39880 LHX9-203ENST00000367390 7413 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
CUX1P39880 ARHGEF9-222ENST00000636048 5059 ntTSL 5 BASIC11.33□□□□□ -0.6
CUX1P39880 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 SEMA3E-202ENST00000427262 2414 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 RPL31P11-201ENST00000426558 1558 ntBASIC11.32□□□□□ -0.6
CUX1P39880 CEBPG-202ENST00000585933 3845 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 AC009135.2-201ENST00000624136 1768 ntBASIC11.32□□□□□ -0.6
CUX1P39880 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 RPL21P50-201ENST00000417698 477 ntBASIC11.32□□□□□ -0.6
CUX1P39880 OSTCP4-201ENST00000424397 449 ntBASIC11.32□□□□□ -0.6
CUX1P39880 OSBPL10-AS1-203ENST00000428872 538 ntTSL 3 BASIC11.32□□□□□ -0.6
CUX1P39880 GM2AP2-201ENST00000491764 562 ntBASIC11.32□□□□□ -0.6
CUX1P39880 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC11.32□□□□□ -0.6
CUX1P39880 AL365223.1-201ENST00000574864 1297 ntBASIC11.32□□□□□ -0.6
CUX1P39880 AC012146.2-201ENST00000576545 416 ntBASIC11.32□□□□□ -0.6
CUX1P39880 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
CUX1P39880 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms