Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RN7SL569P-201ENST00000494652 288 ntBASIC11.45□□□□□ -0.58
CUX1P39880 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 EEF1B2P2-201ENST00000519625 676 ntBASIC11.45□□□□□ -0.58
CUX1P39880 TBCA-209ENST00000522370 435 ntTSL 3 BASIC11.45□□□□□ -0.58
CUX1P39880 AC026898.1-201ENST00000586404 571 ntBASIC11.45□□□□□ -0.58
CUX1P39880 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 AC114477.1-201ENST00000605097 605 ntBASIC11.45□□□□□ -0.58
CUX1P39880 AC114546.4-201ENST00000624413 369 ntBASIC11.45□□□□□ -0.58
CUX1P39880 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC11.45□□□□□ -0.58
CUX1P39880 TRERF1-205ENST00000541110 7646 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 ABLIM1-206ENST00000392952 6841 ntTSL 5 BASIC11.45□□□□□ -0.58
CUX1P39880 NAPEPLD-209ENST00000465647 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
CUX1P39880 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 TACC2-207ENST00000369000 3813 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 AL451064.2-201ENST00000623514 1654 ntBASIC11.44□□□□□ -0.58
CUX1P39880 ZNF217-202ENST00000371471 5796 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC11.44□□□□□ -0.58
CUX1P39880 SEMA6A-210ENST00000510263 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 DNAJC27-AS1-205ENST00000434897 4660 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 PDE1A-201ENST00000351439 2338 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
CUX1P39880 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC11.44□□□□□ -0.58
CUX1P39880 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC11.44□□□□□ -0.58
CUX1P39880 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC11.44□□□□□ -0.58
CUX1P39880 AC002310.3-201ENST00000569728 723 ntBASIC11.44□□□□□ -0.58
CUX1P39880 AC007448.1-201ENST00000582714 234 ntBASIC11.44□□□□□ -0.58
CUX1P39880 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC11.44□□□□□ -0.58
CUX1P39880 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 STON2-209ENST00000614646 2964 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 AL109924.4-201ENST00000623089 670 ntBASIC11.44□□□□□ -0.58
CUX1P39880 ARHGAP42P5-201ENST00000548856 2936 ntBASIC11.44□□□□□ -0.58
CUX1P39880 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
CUX1P39880 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
CUX1P39880 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 TCF20-202ENST00000359486 7410 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 NKD1-201ENST00000268459 17105 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 ZNF423-203ENST00000561648 7907 ntAPPRIS P3 TSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 NOTCH2-207ENST00000602566 5046 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 AP001527.1-201ENST00000566440 1957 ntBASIC11.43□□□□□ -0.58
CUX1P39880 CD86-209ENST00000493101 1572 ntTSL 2 BASIC11.43□□□□□ -0.58
CUX1P39880 OSBPL9-202ENST00000371714 3352 ntAPPRIS ALT1 TSL 2 BASIC11.43□□□□□ -0.58
CUX1P39880 THADA-202ENST00000402360 2974 ntTSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 ARHGEF9-234ENST00000637557 4775 ntTSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 MRPS6P2-201ENST00000381143 370 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 MIR4432HG-201ENST00000441598 470 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 IGKV1OR22-1-201ENST00000521497 360 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 AC093283.1-201ENST00000565306 1075 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AC010463.3-201ENST00000594077 500 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AC124916.2-201ENST00000604416 224 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AC108865.2-201ENST00000606881 432 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AC093635.1-201ENST00000609028 555 ntBASIC11.43□□□□□ -0.58
CUX1P39880 AL390882.1-201ENST00000618821 594 ntBASIC11.43□□□□□ -0.58
CUX1P39880 SNX18P10-201ENST00000625014 519 ntBASIC11.43□□□□□ -0.58
CUX1P39880 EPHA4-201ENST00000281821 6346 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
CUX1P39880 SLC9A6-207ENST00000636092 4697 ntTSL 5 BASIC11.43□□□□□ -0.58
CUX1P39880 AC100771.2-201ENST00000525833 1350 ntTSL 3 BASIC11.43□□□□□ -0.58
CUX1P39880 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 ITGB6-201ENST00000283249 4675 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 RN7SKP237-201ENST00000364663 301 ntBASIC11.42□□□□□ -0.58
CUX1P39880 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 AC108479.1-201ENST00000431142 427 ntBASIC11.42□□□□□ -0.58
CUX1P39880 HBG2-204ENST00000444587 307 ntTSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 AC135721.2-201ENST00000464237 300 ntBASIC11.42□□□□□ -0.58
CUX1P39880 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC11.42□□□□□ -0.58
CUX1P39880 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC11.42□□□□□ -0.58
CUX1P39880 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 APOC2-205ENST00000592257 444 ntTSL 3 BASIC11.42□□□□□ -0.58
CUX1P39880 AC079315.1-201ENST00000602952 623 ntBASIC11.42□□□□□ -0.58
CUX1P39880 AL589743.6-201ENST00000611025 117 ntBASIC11.42□□□□□ -0.58
CUX1P39880 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 AC024475.3-203ENST00000634971 854 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 EDA-213ENST00000616899 4643 ntTSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 ZCCHC11-204ENST00000371544 5858 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CUX1P39880 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CUX1P39880 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC11.42□□□□□ -0.58
CUX1P39880 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CUX1P39880 AC074141.1-201ENST00000588129 2995 ntBASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms