Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 MIR6886-201ENST00000619864 61 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 SNX18P10-201ENST00000625014 519 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 TEX41-255ENST00000626404 610 ntTSL 5 BASIC8.22□□□□□ -1.09
COL4A5P29400 ZFYVE26-201ENST00000347230 9675 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 PAPPA2-202ENST00000367662 9691 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 ADAM10-201ENST00000260408 11431 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 UBXN8-201ENST00000265616 1450 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 FAM217B-201ENST00000358293 5152 ntAPPRIS P2 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC009135.2-201ENST00000624136 1768 ntBASIC8.22□□□□□ -1.09
COL4A5P29400 AL929601.3-201ENST00000613990 2086 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC8.22□□□□□ -1.09
COL4A5P29400 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC8.22□□□□□ -1.09
COL4A5P29400 CALML4-208ENST00000540479 4603 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 PBRM1-208ENST00000410007 4905 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 NEK1-207ENST00000511633 5536 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 ZNF146-202ENST00000456324 3780 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 NLRP3-203ENST00000366496 3996 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
COL4A5P29400 AC116535.1-201ENST00000499765 2335 ntTSL 2 BASIC8.22□□□□□ -1.09
COL4A5P29400 IYD-201ENST00000229447 7513 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
COL4A5P29400 SORBS2-209ENST00000418609 5529 ntTSL 2 BASIC8.21□□□□□ -1.09
COL4A5P29400 SUN3-201ENST00000297325 1416 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
COL4A5P29400 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC8.21□□□□□ -1.09
COL4A5P29400 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC8.21□□□□□ -1.09
COL4A5P29400 AL360013.1-201ENST00000419031 858 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 AC002127.1-201ENST00000421305 225 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 GAPDHP57-201ENST00000424400 585 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 AC110602.1-201ENST00000437414 318 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC8.21□□□□□ -1.09
COL4A5P29400 ZNF519P4-201ENST00000514008 125 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC8.21□□□□□ -1.09
COL4A5P29400 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC8.21□□□□□ -1.09
COL4A5P29400 AC027243.2-201ENST00000602530 724 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 AC114477.1-201ENST00000605097 605 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
COL4A5P29400 Six3os1_1.1-201ENST00000620900 87 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 AP001052.1-201ENST00000626421 99 ntBASIC8.21□□□□□ -1.09
COL4A5P29400 EPPK1-201ENST00000568225 15530 ntAPPRIS ALT2 BASIC8.21□□□□□ -1.09
COL4A5P29400 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
COL4A5P29400 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
COL4A5P29400 OR1D2-203ENST00000641833 4887 ntAPPRIS P1 BASIC8.21□□□□□ -1.09
COL4A5P29400 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC8.21□□□□□ -1.09
COL4A5P29400 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC8.21□□□□□ -1.09
COL4A5P29400 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 RPRD2-203ENST00000401000 7605 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 ZNF286B-201ENST00000285274 5145 ntTSL 3 BASIC8.21□□□□□ -1.1
COL4A5P29400 SEC31B-201ENST00000370345 4612 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 AL355488.1-201ENST00000449169 2611 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 ZRANB2-AS1-201ENST00000426999 607 ntTSL 3 BASIC8.21□□□□□ -1.1
COL4A5P29400 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC8.21□□□□□ -1.1
COL4A5P29400 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC8.21□□□□□ -1.1
COL4A5P29400 SETP20-201ENST00000457046 852 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 AC084754.1-201ENST00000463466 464 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 AC026774.2-201ENST00000513990 1098 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 OR52H2P-201ENST00000514607 902 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
COL4A5P29400 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC8.21□□□□□ -1.1
COL4A5P29400 AC013283.1-201ENST00000557282 492 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 RN7SL366P-201ENST00000577957 292 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 MIR3614-201ENST00000581261 86 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 AL589743.6-201ENST00000611025 117 ntBASIC8.21□□□□□ -1.1
COL4A5P29400 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 CACNB2-209ENST00000396576 4464 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 MAMDC2-AS1-202ENST00000414515 2097 ntTSL 5 BASIC8.2□□□□□ -1.1
COL4A5P29400 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC8.2□□□□□ -1.1
COL4A5P29400 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC8.2□□□□□ -1.1
COL4A5P29400 ZNF322-201ENST00000415922 4817 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 LRRC37A15P-201ENST00000514785 1355 ntBASIC8.2□□□□□ -1.1
COL4A5P29400 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC8.2□□□□□ -1.1
COL4A5P29400 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC8.2□□□□□ -1.1
COL4A5P29400 MAP7D3-204ENST00000370663 4446 ntAPPRIS ALT2 TSL 2 BASIC8.2□□□□□ -1.1
COL4A5P29400 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 PHF21A-201ENST00000323180 3675 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
COL4A5P29400 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms