Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AC099778.1-201ENST00000568593 1911 ntBASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CUEDC1Q9NWM3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 AC112907.3-201ENST00000577781 2400 ntBASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 AL031963.3-201ENST00000606441 850 ntBASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 HLA-B-256ENST00000639848 1089 ntBASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 AC092368.3-202ENST00000574180 1591 ntBASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CUEDC1Q9NWM3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 KRT8P17-201ENST00000453110 1448 ntBASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 AC023632.3-201ENST00000521633 145 ntBASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 AC060766.5-201ENST00000590539 871 ntBASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.29■□□□□ 0.68
CUEDC1Q9NWM3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 GCSHP5-201ENST00000443090 522 ntBASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 PNMA6B-201ENST00000538162 1200 ntBASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.28■□□□□ 0.68
CUEDC1Q9NWM3 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 BX119927.1-201ENST00000636596 1552 ntBASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 AC073130.3-201ENST00000624389 2278 ntBASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CUEDC1Q9NWM3 KRT8P20-201ENST00000423953 1409 ntBASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms