Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MMP28Q9H239 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC17.57■□□□□ 0.4
MMP28Q9H239 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
MMP28Q9H239 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
MMP28Q9H239 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 AC018470.1-201ENST00000624790 3129 ntBASIC17.56■□□□□ 0.4
MMP28Q9H239 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
MMP28Q9H239 MIR572-201ENST00000384983 95 ntBASIC17.56■□□□□ 0.4
MMP28Q9H239 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC17.56■□□□□ 0.4
MMP28Q9H239 AL034346.1-201ENST00000568244 1277 ntBASIC17.56■□□□□ 0.4
MMP28Q9H239 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
MMP28Q9H239 AC105233.4-201ENST00000642045 216 ntBASIC17.56■□□□□ 0.4
MMP28Q9H239 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
MMP28Q9H239 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.56■□□□□ 0.4
MMP28Q9H239 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC17.55■□□□□ 0.4
MMP28Q9H239 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.55■□□□□ 0.4
MMP28Q9H239 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.55■□□□□ 0.4
MMP28Q9H239 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
MMP28Q9H239 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
MMP28Q9H239 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.55■□□□□ 0.4
MMP28Q9H239 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC17.55■□□□□ 0.4
MMP28Q9H239 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.55■□□□□ 0.4
MMP28Q9H239 SMUG1P1-201ENST00000590640 811 ntBASIC17.55■□□□□ 0.4
MMP28Q9H239 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.55■□□□□ 0.4
MMP28Q9H239 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.55■□□□□ 0.4
MMP28Q9H239 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
MMP28Q9H239 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
MMP28Q9H239 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.54■□□□□ 0.4
MMP28Q9H239 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
MMP28Q9H239 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
MMP28Q9H239 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
MMP28Q9H239 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
MMP28Q9H239 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.54■□□□□ 0.4
MMP28Q9H239 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.54■□□□□ 0.4
MMP28Q9H239 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
MMP28Q9H239 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.54■□□□□ 0.4
MMP28Q9H239 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
MMP28Q9H239 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.54■□□□□ 0.4
MMP28Q9H239 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MMP28Q9H239 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.53■□□□□ 0.4
MMP28Q9H239 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.53■□□□□ 0.4
MMP28Q9H239 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 ANKRD20A6P-201ENST00000618763 204 ntBASIC17.53■□□□□ 0.4
MMP28Q9H239 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.53■□□□□ 0.4
MMP28Q9H239 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
MMP28Q9H239 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.53■□□□□ 0.4
MMP28Q9H239 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MMP28Q9H239 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
MMP28Q9H239 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
MMP28Q9H239 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MMP28Q9H239 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms