Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAIPQ9BWF2 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRAIPQ9BWF2 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRAIPQ9BWF2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRAIPQ9BWF2 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TRAIPQ9BWF2 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 KRASP1-201ENST00000407852 552 ntBASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.89■■□□□ 1.09
TRAIPQ9BWF2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 PTBP1P-201ENST00000554374 1601 ntBASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 RARRES2P10-201ENST00000564312 460 ntBASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAIPQ9BWF2 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 AL157384.1-201ENST00000445995 2473 ntBASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 PRKY-204ENST00000533551 1019 ntBASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 AP001412.1-201ENST00000608405 714 ntBASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TRAIPQ9BWF2 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 SNORA78-201ENST00000459373 127 ntBASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TRAIPQ9BWF2 LINC01521-201ENST00000504184 1943 ntBASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TRAIPQ9BWF2 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms