Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL12A1Q99715 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC17.59■□□□□ 0.41
COL12A1Q99715 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL12A1Q99715 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL12A1Q99715 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.58■□□□□ 0.41
COL12A1Q99715 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.58■□□□□ 0.41
COL12A1Q99715 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC17.58■□□□□ 0.41
COL12A1Q99715 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL12A1Q99715 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL12A1Q99715 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.58■□□□□ 0.41
COL12A1Q99715 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.41
COL12A1Q99715 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC17.58■□□□□ 0.41
COL12A1Q99715 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL12A1Q99715 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
COL12A1Q99715 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.58■□□□□ 0.41
COL12A1Q99715 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.58■□□□□ 0.4
COL12A1Q99715 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.58■□□□□ 0.4
COL12A1Q99715 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.58■□□□□ 0.4
COL12A1Q99715 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL12A1Q99715 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.58■□□□□ 0.4
COL12A1Q99715 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
COL12A1Q99715 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL12A1Q99715 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC17.57■□□□□ 0.4
COL12A1Q99715 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.57■□□□□ 0.4
COL12A1Q99715 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.57■□□□□ 0.4
COL12A1Q99715 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.57■□□□□ 0.4
COL12A1Q99715 AC111152.3-201ENST00000569699 673 ntBASIC17.57■□□□□ 0.4
COL12A1Q99715 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL12A1Q99715 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL12A1Q99715 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL12A1Q99715 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL12A1Q99715 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
COL12A1Q99715 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.57■□□□□ 0.4
COL12A1Q99715 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.57■□□□□ 0.4
COL12A1Q99715 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC17.57■□□□□ 0.4
COL12A1Q99715 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.57■□□□□ 0.4
COL12A1Q99715 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL12A1Q99715 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
COL12A1Q99715 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.57■□□□□ 0.4
COL12A1Q99715 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 HMGA1P5-201ENST00000412453 271 ntBASIC17.56■□□□□ 0.4
COL12A1Q99715 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC17.56■□□□□ 0.4
COL12A1Q99715 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.56■□□□□ 0.4
COL12A1Q99715 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.56■□□□□ 0.4
COL12A1Q99715 AC083849.1-201ENST00000615227 514 ntBASIC17.56■□□□□ 0.4
COL12A1Q99715 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 C1orf229-201ENST00000623686 2258 ntBASIC17.56■□□□□ 0.4
COL12A1Q99715 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
COL12A1Q99715 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.56■□□□□ 0.4
COL12A1Q99715 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.56■□□□□ 0.4
COL12A1Q99715 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.56■□□□□ 0.4
COL12A1Q99715 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL12A1Q99715 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.55■□□□□ 0.4
COL12A1Q99715 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.55■□□□□ 0.4
COL12A1Q99715 FSCN1P1-201ENST00000568912 1481 ntBASIC17.55■□□□□ 0.4
COL12A1Q99715 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.55■□□□□ 0.4
COL12A1Q99715 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.55■□□□□ 0.4
COL12A1Q99715 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL12A1Q99715 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
COL12A1Q99715 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC17.54■□□□□ 0.4
COL12A1Q99715 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.54■□□□□ 0.4
COL12A1Q99715 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
COL12A1Q99715 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL12A1Q99715 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms