Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 AL359075.1-203ENST00000462729 1002 ntBASIC19.9■□□□□ 0.78
VPS13AQ96RL7 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS13AQ96RL7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS13AQ96RL7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.89■□□□□ 0.78
VPS13AQ96RL7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.89■□□□□ 0.78
VPS13AQ96RL7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
VPS13AQ96RL7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.89■□□□□ 0.78
VPS13AQ96RL7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS13AQ96RL7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 DGCR10-201ENST00000609839 495 ntBASIC19.88■□□□□ 0.77
VPS13AQ96RL7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 AC092647.4-201ENST00000457211 535 ntBASIC19.88■□□□□ 0.77
VPS13AQ96RL7 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 IER3-202ENST00000376377 1350 ntBASIC19.88■□□□□ 0.77
VPS13AQ96RL7 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS13AQ96RL7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 PGM5P4-201ENST00000421970 445 ntBASIC19.87■□□□□ 0.77
VPS13AQ96RL7 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 AL121906.2-201ENST00000621597 723 ntBASIC19.87■□□□□ 0.77
VPS13AQ96RL7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 KRT8P45-201ENST00000414328 1447 ntBASIC19.87■□□□□ 0.77
VPS13AQ96RL7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 AC097488.1-201ENST00000507834 756 ntBASIC19.87■□□□□ 0.77
VPS13AQ96RL7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS13AQ96RL7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 RN7SL510P-201ENST00000581311 263 ntBASIC19.86■□□□□ 0.77
VPS13AQ96RL7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS13AQ96RL7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms