Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
COL21A1Q96P44 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.85■□□□□ 0.61
COL21A1Q96P44 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL21A1Q96P44 MKRN4P-201ENST00000444706 1521 ntBASIC18.84■□□□□ 0.61
COL21A1Q96P44 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 KRT8P36-201ENST00000489121 1440 ntBASIC18.84■□□□□ 0.61
COL21A1Q96P44 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 PGM5P4-201ENST00000421970 445 ntBASIC18.84■□□□□ 0.61
COL21A1Q96P44 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.84■□□□□ 0.61
COL21A1Q96P44 TCF3P1-201ENST00000423021 1937 ntBASIC18.84■□□□□ 0.61
COL21A1Q96P44 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL21A1Q96P44 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL21A1Q96P44 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL21A1Q96P44 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL21A1Q96P44 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL21A1Q96P44 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.83■□□□□ 0.61
COL21A1Q96P44 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL21A1Q96P44 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL21A1Q96P44 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 AC087289.5-201ENST00000586076 3175 ntBASIC18.82■□□□□ 0.6
COL21A1Q96P44 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 SLC29A4P1-201ENST00000398760 971 ntBASIC18.82■□□□□ 0.6
COL21A1Q96P44 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL21A1Q96P44 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 AC087633.2-202ENST00000565166 1439 ntBASIC18.82■□□□□ 0.6
COL21A1Q96P44 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL21A1Q96P44 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL21A1Q96P44 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.81■□□□□ 0.6
COL21A1Q96P44 TSPY6P-201ENST00000448518 926 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms