Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 UNC93B5-201ENST00000530315 699 ntBASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 KRT8P20-201ENST00000423953 1409 ntBASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SHROOM3Q8TF72 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 AP006294.2-201ENST00000641667 209 ntBASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SHROOM3Q8TF72 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 AC092368.3-202ENST00000574180 1591 ntBASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.4■□□□□ 0.86
SHROOM3Q8TF72 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHROOM3Q8TF72 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.39■□□□□ 0.86
SHROOM3Q8TF72 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SHROOM3Q8TF72 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.86
SHROOM3Q8TF72 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.39■□□□□ 0.86
SHROOM3Q8TF72 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 C2orf69P4-201ENST00000565394 541 ntBASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SHROOM3Q8TF72 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 AC124283.5-201ENST00000624661 1809 ntBASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 AL596275.1-201ENST00000423464 877 ntBASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
SHROOM3Q8TF72 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.37■□□□□ 0.85
SHROOM3Q8TF72 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms