Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 HLA-G-202ENST00000376815 851 ntBASIC19.56■□□□□ 0.72
VRK3Q8IV63 HLA-G-203ENST00000376818 1127 ntBASIC19.56■□□□□ 0.72
VRK3Q8IV63 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 KRT18P6-201ENST00000555540 1265 ntBASIC19.56■□□□□ 0.72
VRK3Q8IV63 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VRK3Q8IV63 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VRK3Q8IV63 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 RNA5SP413-201ENST00000516373 109 ntBASIC19.55■□□□□ 0.72
VRK3Q8IV63 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.55■□□□□ 0.72
VRK3Q8IV63 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
VRK3Q8IV63 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
VRK3Q8IV63 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.54■□□□□ 0.72
VRK3Q8IV63 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
VRK3Q8IV63 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
VRK3Q8IV63 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
VRK3Q8IV63 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
VRK3Q8IV63 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.53■□□□□ 0.72
VRK3Q8IV63 KRT16P6-202ENST00000425692 1426 ntBASIC19.52■□□□□ 0.72
VRK3Q8IV63 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VRK3Q8IV63 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms