Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP39Q53GS9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.32■□□□□ 0.84
USP39Q53GS9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
USP39Q53GS9 AC012306.2-201ENST00000609350 630 ntBASIC20.32■□□□□ 0.84
USP39Q53GS9 AC026471.5-201ENST00000615068 467 ntBASIC20.32■□□□□ 0.84
USP39Q53GS9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP39Q53GS9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP39Q53GS9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP39Q53GS9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP39Q53GS9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.31■□□□□ 0.84
USP39Q53GS9 AL355355.2-201ENST00000442321 338 ntBASIC20.31■□□□□ 0.84
USP39Q53GS9 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.31■□□□□ 0.84
USP39Q53GS9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
USP39Q53GS9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP39Q53GS9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.3■□□□□ 0.84
USP39Q53GS9 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.3■□□□□ 0.84
USP39Q53GS9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.3■□□□□ 0.84
USP39Q53GS9 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
USP39Q53GS9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP39Q53GS9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.3■□□□□ 0.84
USP39Q53GS9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USP39Q53GS9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
USP39Q53GS9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.29■□□□□ 0.84
USP39Q53GS9 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 RCN1P1-201ENST00000400413 996 ntBASIC20.29■□□□□ 0.84
USP39Q53GS9 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.29■□□□□ 0.84
USP39Q53GS9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
USP39Q53GS9 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
USP39Q53GS9 AP003071.4-201ENST00000562276 1284 ntBASIC20.29■□□□□ 0.84
USP39Q53GS9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.29■□□□□ 0.84
USP39Q53GS9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 AL121829.2-201ENST00000620908 328 ntBASIC20.29■□□□□ 0.84
USP39Q53GS9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
USP39Q53GS9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
USP39Q53GS9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
USP39Q53GS9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.29■□□□□ 0.84
USP39Q53GS9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.29■□□□□ 0.84
USP39Q53GS9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.28■□□□□ 0.84
USP39Q53GS9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
USP39Q53GS9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
USP39Q53GS9 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
USP39Q53GS9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.28■□□□□ 0.84
USP39Q53GS9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
USP39Q53GS9 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms