Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 WWOX-216ENST00000569818 525 ntBASIC19.2■□□□□ 0.66
COL28A1Q2UY09 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.2■□□□□ 0.66
COL28A1Q2UY09 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 KRT18P56-201ENST00000507275 550 ntBASIC19.19■□□□□ 0.66
COL28A1Q2UY09 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 RPS15-203ENST00000586096 570 ntTSL 2 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.19■□□□□ 0.66
COL28A1Q2UY09 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 AC073508.3-201ENST00000619697 1419 ntBASIC19.18■□□□□ 0.66
COL28A1Q2UY09 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 RBM17P1-201ENST00000453646 1190 ntBASIC19.18■□□□□ 0.66
COL28A1Q2UY09 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 AP000525.1-201ENST00000608286 694 ntBASIC19.18■□□□□ 0.66
COL28A1Q2UY09 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL28A1Q2UY09 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 MIR1238-201ENST00000408483 83 ntBASIC19.17■□□□□ 0.66
COL28A1Q2UY09 AC026396.1-201ENST00000419388 421 ntBASIC19.17■□□□□ 0.66
COL28A1Q2UY09 FAM197Y1-201ENST00000421178 764 ntBASIC19.17■□□□□ 0.66
COL28A1Q2UY09 AC245052.3-201ENST00000450182 901 ntBASIC19.17■□□□□ 0.66
COL28A1Q2UY09 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 AF186192.3-201ENST00000583427 947 ntBASIC19.17■□□□□ 0.66
COL28A1Q2UY09 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL28A1Q2UY09 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 AC079598.2-202ENST00000546624 1451 ntBASIC19.16■□□□□ 0.66
COL28A1Q2UY09 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL28A1Q2UY09 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms