Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
HMGCS2P54868 CYP2D8P-201ENST00000433633 1490 ntBASIC23.17■■□□□ 1.3
HMGCS2P54868 KRT16P1-201ENST00000399124 1418 ntBASIC23.17■■□□□ 1.3
HMGCS2P54868 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGCS2P54868 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HMGCS2P54868 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HMGCS2P54868 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGCS2P54868 AC005521.1-201ENST00000393351 872 ntBASIC23.17■■□□□ 1.3
HMGCS2P54868 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC23.17■■□□□ 1.3
HMGCS2P54868 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
HMGCS2P54868 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.17■■□□□ 1.3
HMGCS2P54868 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HMGCS2P54868 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.17■■□□□ 1.3
HMGCS2P54868 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGCS2P54868 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
HMGCS2P54868 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
HMGCS2P54868 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
HMGCS2P54868 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.17■■□□□ 1.3
HMGCS2P54868 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HMGCS2P54868 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 LINC01568-207ENST00000641790 1380 ntBASIC23.16■■□□□ 1.3
HMGCS2P54868 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
HMGCS2P54868 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC23.16■■□□□ 1.3
HMGCS2P54868 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.16■■□□□ 1.3
HMGCS2P54868 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC23.16■■□□□ 1.3
HMGCS2P54868 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC23.16■■□□□ 1.3
HMGCS2P54868 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 AF106564.1-201ENST00000607058 2553 ntBASIC23.16■■□□□ 1.3
HMGCS2P54868 ERF-202ENST00000440177 2032 ntTSL 2 BASIC23.16■■□□□ 1.3
HMGCS2P54868 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
HMGCS2P54868 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
HMGCS2P54868 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
HMGCS2P54868 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGCS2P54868 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC23.15■■□□□ 1.3
HMGCS2P54868 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC23.15■■□□□ 1.3
HMGCS2P54868 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC23.15■■□□□ 1.3
HMGCS2P54868 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGCS2P54868 FITM1-202ENST00000559294 800 ntBASIC23.15■■□□□ 1.3
HMGCS2P54868 CBFB-203ENST00000561924 584 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGCS2P54868 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC23.15■■□□□ 1.3
HMGCS2P54868 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGCS2P54868 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGCS2P54868 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
HMGCS2P54868 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
HMGCS2P54868 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
HMGCS2P54868 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
HMGCS2P54868 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HMGCS2P54868 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
HMGCS2P54868 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.14■■□□□ 1.3
HMGCS2P54868 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGCS2P54868 DUT-205ENST00000558813 769 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGCS2P54868 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 NAPSB-206ENST00000562112 1266 ntBASIC23.14■■□□□ 1.29
HMGCS2P54868 AL049597.2-201ENST00000565575 961 ntBASIC23.14■■□□□ 1.29
HMGCS2P54868 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
HMGCS2P54868 AC005229.4-201ENST00000610085 2198 ntBASIC23.14■■□□□ 1.29
HMGCS2P54868 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGCS2P54868 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.14■■□□□ 1.29
HMGCS2P54868 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
HMGCS2P54868 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.14■■□□□ 1.29
HMGCS2P54868 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC23.13■■□□□ 1.29
HMGCS2P54868 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.13■■□□□ 1.29
HMGCS2P54868 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 KRT18P57-201ENST00000443599 1254 ntBASIC23.13■■□□□ 1.29
HMGCS2P54868 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC23.13■■□□□ 1.29
HMGCS2P54868 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.13■■□□□ 1.29
HMGCS2P54868 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 AC010947.1-201ENST00000623454 693 ntBASIC23.13■■□□□ 1.29
HMGCS2P54868 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.13■■□□□ 1.29
HMGCS2P54868 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
HMGCS2P54868 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
HMGCS2P54868 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC23.13■■□□□ 1.29
HMGCS2P54868 FP700111.2-201ENST00000619190 1892 ntBASIC23.13■■□□□ 1.29
HMGCS2P54868 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
HMGCS2P54868 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.12■■□□□ 1.29
HMGCS2P54868 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
HMGCS2P54868 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGCS2P54868 ARMC10P1-201ENST00000313754 855 ntBASIC23.12■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms