Protein–RNA interactions for Protein: P53867

ATG4, Cysteine protease ATG4, yeastyeast

Predictions only

Length 494 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
ATG4P53867 YHR131W-AYHR131W-A 246 nt1.42□□□□□ -2.18
ATG4P53867 YLR041WYLR041W 321 nt1.42□□□□□ -2.18
ATG4P53867 BRR2YER172C 6492 nt1.42□□□□□ -2.18
ATG4P53867 SWI4YER111C 3282 nt1.42□□□□□ -2.18
ATG4P53867 SPC110YDR356W 2835 nt1.41□□□□□ -2.18
ATG4P53867 YMR326CYMR326C 309 nt1.41□□□□□ -2.18
ATG4P53867 snR190snR190 190 nt1.41□□□□□ -2.18
ATG4P53867 BST1YFL025C 3090 nt1.41□□□□□ -2.18
ATG4P53867 MEC1YBR136W 7107 nt1.41□□□□□ -2.18
ATG4P53867 CAT8YMR280C 4302 nt1.4□□□□□ -2.19
ATG4P53867 YLR422WYLR422W 5799 nt1.4□□□□□ -2.19
ATG4P53867 RPL26BYGR034W 384 nt1.39□□□□□ -2.19
ATG4P53867 snR61snR61 90 nt1.38□□□□□ -2.19
ATG4P53867 YBR200W-AYBR200W-A 165 nt1.38□□□□□ -2.19
ATG4P53867 CDC39YCR093W 6327 nt1.38□□□□□ -2.19
ATG4P53867 CHS1YNL192W 3396 nt1.37□□□□□ -2.19
ATG4P53867 tM(CAU)Q2tM(CAU)Q2 78 nt1.37□□□□□ -2.19
ATG4P53867 YLR232WYLR232W 348 nt1.37□□□□□ -2.19
ATG4P53867 FIG2YCR089W 4830 nt1.36□□□□□ -2.19
ATG4P53867 YHR217CYHR217C 462 nt1.35□□□□□ -2.19
ATG4P53867 AZF1YOR113W 2745 nt1.35□□□□□ -2.19
ATG4P53867 PIK1YNL267W 3201 nt1.34□□□□□ -2.19
ATG4P53867 SEC3YER008C 4011 nt1.34□□□□□ -2.2
ATG4P53867 NUP145YGL092W 3954 nt1.33□□□□□ -2.2
ATG4P53867 EST2YLR318W 2655 nt1.33□□□□□ -2.2
ATG4P53867 YDR210WYDR210W 228 nt1.32□□□□□ -2.2
ATG4P53867 RAD9YDR217C 3930 nt1.32□□□□□ -2.2
ATG4P53867 COG6YNL041C 2520 nt1.32□□□□□ -2.2
ATG4P53867 STF2YGR008C 255 nt1.31□□□□□ -2.2
ATG4P53867 RCO1YMR075W 2055 nt1.31□□□□□ -2.2
ATG4P53867 FYV8YGR196C 2454 nt1.31□□□□□ -2.2
ATG4P53867 CCH1YGR217W 6120 nt1.3□□□□□ -2.2
ATG4P53867 MSH3YCR092C 3057 nt1.3□□□□□ -2.2
ATG4P53867 PET127YOR017W 2403 nt1.29□□□□□ -2.2
ATG4P53867 HKR1YDR420W 5409 nt1.29□□□□□ -2.2
ATG4P53867 MSN5YDR335W 3675 nt1.29□□□□□ -2.2
ATG4P53867 YGL041C-BYGL041C-B 183 nt1.29□□□□□ -2.2
ATG4P53867 YJL127W-AYJL127W-A 117 nt1.28□□□□□ -2.2
ATG4P53867 KAP120YPL125W 3099 nt1.27□□□□□ -2.21
ATG4P53867 tN(GUU)QtN(GUU)Q 71 nt1.25□□□□□ -2.21
ATG4P53867 SEC8YPR055W 3198 nt1.25□□□□□ -2.21
ATG4P53867 SEC1YDR164C 2175 nt1.25□□□□□ -2.21
ATG4P53867 YGR130CYGR130C 2451 nt1.25□□□□□ -2.21
ATG4P53867 SBH1YER087C-B 249 nt1.24□□□□□ -2.21
ATG4P53867 tQ(UUG)E2tQ(UUG)E2 72 nt1.24□□□□□ -2.21
ATG4P53867 PRP16YKR086W 3216 nt1.24□□□□□ -2.21
ATG4P53867 CLU1YMR012W 3834 nt1.23□□□□□ -2.21
ATG4P53867 tH(GUG)E1tH(GUG)E1 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)E2tH(GUG)E2 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)G1tH(GUG)G1 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)G2tH(GUG)G2 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)HtH(GUG)H 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)KtH(GUG)K 72 nt1.22□□□□□ -2.21
ATG4P53867 tH(GUG)MtH(GUG)M 72 nt1.22□□□□□ -2.21
ATG4P53867 YPR160W-AYPR160W-A 81 nt1.22□□□□□ -2.21
ATG4P53867 YNL284C-BYNL284C-B 5268 nt1.22□□□□□ -2.21
ATG4P53867 YDL247W-AYDL247W-A 75 nt1.21□□□□□ -2.22
ATG4P53867 YGR146C-AYGR146C-A 162 nt1.21□□□□□ -2.22
ATG4P53867 YLR399W-AYLR399W-A 105 nt1.21□□□□□ -2.22
ATG4P53867 HUG1YML058W-A 207 nt1.21□□□□□ -2.22
ATG4P53867 BIR1YJR089W 2865 nt1.2□□□□□ -2.22
ATG4P53867 BEM3YPL115C 3387 nt1.19□□□□□ -2.22
ATG4P53867 LAA1YJL207C 6045 nt1.19□□□□□ -2.22
ATG4P53867 YDL073WYDL073W 2955 nt1.18□□□□□ -2.22
ATG4P53867 YNL266WYNL266W 420 nt1.18□□□□□ -2.22
ATG4P53867 CDC25YLR310C 4770 nt1.18□□□□□ -2.22
ATG4P53867 ROM2YLR371W 4071 nt1.18□□□□□ -2.22
ATG4P53867 NST1YNL091W 3723 nt1.14□□□□□ -2.23
ATG4P53867 IML1YJR138W 4755 nt1.14□□□□□ -2.23
ATG4P53867 UBP3YER151C 2739 nt1.14□□□□□ -2.23
ATG4P53867 YBR072C-AYBR072C-A 162 nt1.14□□□□□ -2.23
ATG4P53867 SPT7YBR081C 3999 nt1.14□□□□□ -2.23
ATG4P53867 snR81snR81 201 nt1.13□□□□□ -2.23
ATG4P53867 YSP1YHR155W 3687 nt1.12□□□□□ -2.23
ATG4P53867 NNF2YGR089W 2811 nt1.11□□□□□ -2.23
ATG4P53867 BUD3YCL014W 4911 nt1.11□□□□□ -2.23
ATG4P53867 YJR029WYJR029W 5268 nt1.1□□□□□ -2.23
ATG4P53867 YPR137C-BYPR137C-B 5268 nt1.1□□□□□ -2.23
ATG4P53867 tS(GCU)Q1tS(GCU)Q1 86 nt1.09□□□□□ -2.23
ATG4P53867 tV(UAC)BtV(UAC)B 74 nt1.09□□□□□ -2.23
ATG4P53867 tV(UAC)DtV(UAC)D 74 nt1.09□□□□□ -2.23
ATG4P53867 MYO1YHR023W 5787 nt1.09□□□□□ -2.24
ATG4P53867 GLG1YKR058W 1851 nt1.07□□□□□ -2.24
ATG4P53867 RKR1YMR247C 4689 nt1.07□□□□□ -2.24
ATG4P53867 SIP4YJL089W 2490 nt1.06□□□□□ -2.24
ATG4P53867 YAL037C-AYAL037C-A 93 nt1.06□□□□□ -2.24
ATG4P53867 RPM2YML091C 3609 nt1.05□□□□□ -2.24
ATG4P53867 YOL083C-AYOL083C-A 141 nt1.04□□□□□ -2.24
ATG4P53867 YBR196C-AYBR196C-A 150 nt1.04□□□□□ -2.24
ATG4P53867 ULP2YIL031W 3105 nt1.03□□□□□ -2.24
ATG4P53867 YIL142C-AYIL142C-A 333 nt1.03□□□□□ -2.24
ATG4P53867 SEC10YLR166C 2616 nt1.02□□□□□ -2.25
ATG4P53867 DOP1YDR141C 5097 nt1.01□□□□□ -2.25
ATG4P53867 VAM6YDL077C 3150 nt1□□□□□ -2.25
ATG4P53867 YLL006W-AYLL006W-A 177 nt0.99□□□□□ -2.25
ATG4P53867 YBL071C-BYBL071C-B 99 nt0.99□□□□□ -2.25
ATG4P53867 YLL066W-BYLL066W-B 171 nt0.96□□□□□ -2.26
ATG4P53867 snR45snR45 172 nt0.95□□□□□ -2.26
ATG4P53867 CSE1YGL238W 2883 nt0.95□□□□□ -2.26
ATG4P53867 EST1YLR233C 2100 nt0.94□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 108.1 ms