Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.9■□□□□ 0.94
LIG3P49916 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 AC007322.4-201ENST00000509611 723 ntBASIC20.9■□□□□ 0.94
LIG3P49916 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.9■□□□□ 0.94
LIG3P49916 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
LIG3P49916 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIG3P49916 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
LIG3P49916 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIG3P49916 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
LIG3P49916 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.89■□□□□ 0.94
LIG3P49916 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LIG3P49916 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIG3P49916 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LIG3P49916 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.89■□□□□ 0.93
LIG3P49916 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.89■□□□□ 0.93
LIG3P49916 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIG3P49916 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.89■□□□□ 0.93
LIG3P49916 AL049796.1-201ENST00000565336 1766 ntBASIC20.89■□□□□ 0.93
LIG3P49916 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIG3P49916 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIG3P49916 AC068338.2-201ENST00000563278 1430 ntBASIC20.88■□□□□ 0.93
LIG3P49916 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LIG3P49916 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
LIG3P49916 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.88■□□□□ 0.93
LIG3P49916 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.88■□□□□ 0.93
LIG3P49916 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.88■□□□□ 0.93
LIG3P49916 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.88■□□□□ 0.93
LIG3P49916 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.88■□□□□ 0.93
LIG3P49916 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
LIG3P49916 AC243732.1-201ENST00000612648 864 ntBASIC20.88■□□□□ 0.93
LIG3P49916 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIG3P49916 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.88■□□□□ 0.93
LIG3P49916 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.87■□□□□ 0.93
LIG3P49916 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.87■□□□□ 0.93
LIG3P49916 AC083906.2-201ENST00000511578 360 ntBASIC20.87■□□□□ 0.93
LIG3P49916 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
LIG3P49916 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.87■□□□□ 0.93
LIG3P49916 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.87■□□□□ 0.93
LIG3P49916 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
LIG3P49916 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.87■□□□□ 0.93
LIG3P49916 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
LIG3P49916 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.87■□□□□ 0.93
LIG3P49916 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIG3P49916 AC005082.1-201ENST00000413042 2259 ntBASIC20.87■□□□□ 0.93
LIG3P49916 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 GPX1P1-201ENST00000388829 606 ntBASIC20.86■□□□□ 0.93
LIG3P49916 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
LIG3P49916 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.86■□□□□ 0.93
LIG3P49916 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 AC104771.1-201ENST00000603335 964 ntBASIC20.86■□□□□ 0.93
LIG3P49916 AL121832.2-201ENST00000610979 668 ntBASIC20.86■□□□□ 0.93
LIG3P49916 AL109923.1-201ENST00000618799 583 ntBASIC20.86■□□□□ 0.93
LIG3P49916 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.86■□□□□ 0.93
LIG3P49916 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
LIG3P49916 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIG3P49916 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.86■□□□□ 0.93
LIG3P49916 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
LIG3P49916 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.85■□□□□ 0.93
LIG3P49916 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 CYP2T1P-201ENST00000432607 1285 ntBASIC20.85■□□□□ 0.93
LIG3P49916 AC245052.3-201ENST00000450182 901 ntBASIC20.85■□□□□ 0.93
LIG3P49916 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.85■□□□□ 0.93
LIG3P49916 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIG3P49916 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.85■□□□□ 0.93
LIG3P49916 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms