Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.68■□□□□ 0.58
CLK1P49759 TERF1P5-201ENST00000477545 1207 ntBASIC18.68■□□□□ 0.58
CLK1P49759 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.68■□□□□ 0.58
CLK1P49759 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.68■□□□□ 0.58
CLK1P49759 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.68■□□□□ 0.58
CLK1P49759 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.68■□□□□ 0.58
CLK1P49759 AC010536.3-201ENST00000620306 533 ntBASIC18.68■□□□□ 0.58
CLK1P49759 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.68■□□□□ 0.58
CLK1P49759 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CLK1P49759 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
CLK1P49759 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
CLK1P49759 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLK1P49759 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK1P49759 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.68■□□□□ 0.58
CLK1P49759 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.67■□□□□ 0.58
CLK1P49759 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLK1P49759 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLK1P49759 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.67■□□□□ 0.58
CLK1P49759 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.67■□□□□ 0.58
CLK1P49759 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLK1P49759 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CLK1P49759 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.66■□□□□ 0.58
CLK1P49759 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.66■□□□□ 0.58
CLK1P49759 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.66■□□□□ 0.58
CLK1P49759 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.66■□□□□ 0.58
CLK1P49759 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
CLK1P49759 BID-214ENST00000617586 542 ntTSL 5 BASIC18.66■□□□□ 0.58
CLK1P49759 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLK1P49759 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.66■□□□□ 0.58
CLK1P49759 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CLK1P49759 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 AC116562.4-201ENST00000641316 2276 ntBASIC18.66■□□□□ 0.58
CLK1P49759 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 AC120498.9-201ENST00000339021 3867 ntBASIC18.66■□□□□ 0.58
CLK1P49759 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLK1P49759 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLK1P49759 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
CLK1P49759 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.65■□□□□ 0.58
CLK1P49759 AC007225.1-201ENST00000566331 1836 ntBASIC18.65■□□□□ 0.58
CLK1P49759 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLK1P49759 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CLK1P49759 AC007322.4-201ENST00000509611 723 ntBASIC18.65■□□□□ 0.58
CLK1P49759 AL162412.1-201ENST00000567129 965 ntBASIC18.65■□□□□ 0.58
CLK1P49759 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CLK1P49759 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CLK1P49759 AC013268.1-206ENST00000638368 961 ntBASIC18.65■□□□□ 0.58
CLK1P49759 AC112229.1-201ENST00000639295 961 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms