Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.23■□□□□ 0.19
CDX1P47902 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.23■□□□□ 0.19
CDX1P47902 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 NARF-205ENST00000412079 1760 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDX1P47902 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.23■□□□□ 0.19
CDX1P47902 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.22■□□□□ 0.19
CDX1P47902 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CDX1P47902 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.22■□□□□ 0.19
CDX1P47902 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.22■□□□□ 0.19
CDX1P47902 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.22■□□□□ 0.19
CDX1P47902 AL162412.1-201ENST00000567129 965 ntBASIC16.22■□□□□ 0.19
CDX1P47902 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 AC104771.1-201ENST00000603335 964 ntBASIC16.22■□□□□ 0.19
CDX1P47902 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.22■□□□□ 0.19
CDX1P47902 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDX1P47902 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.21■□□□□ 0.19
CDX1P47902 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CDX1P47902 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.21■□□□□ 0.19
CDX1P47902 AC068338.2-201ENST00000563278 1430 ntBASIC16.21■□□□□ 0.19
CDX1P47902 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CDX1P47902 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.21■□□□□ 0.19
CDX1P47902 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.21■□□□□ 0.19
CDX1P47902 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC16.21■□□□□ 0.19
CDX1P47902 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.21■□□□□ 0.19
CDX1P47902 AL050303.2-201ENST00000619798 666 ntBASIC16.21■□□□□ 0.19
CDX1P47902 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDX1P47902 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.21■□□□□ 0.18
CDX1P47902 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDX1P47902 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.21■□□□□ 0.18
CDX1P47902 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
CDX1P47902 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDX1P47902 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDX1P47902 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.2■□□□□ 0.18
CDX1P47902 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.2■□□□□ 0.18
CDX1P47902 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 AF201337.1-201ENST00000520239 748 ntBASIC16.2■□□□□ 0.18
CDX1P47902 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.2■□□□□ 0.18
CDX1P47902 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 AL591742.1-201ENST00000604433 565 ntBASIC16.2■□□□□ 0.18
CDX1P47902 WT1-AS_3.1-201ENST00000613262 234 ntBASIC16.2■□□□□ 0.18
CDX1P47902 FGF8-207ENST00000618991 856 ntTSL 3 BASIC16.2■□□□□ 0.18
CDX1P47902 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.2■□□□□ 0.18
CDX1P47902 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.2■□□□□ 0.18
CDX1P47902 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDX1P47902 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.2■□□□□ 0.18
CDX1P47902 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms