Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.77■□□□□ 0.6
SOX3P41225 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.77■□□□□ 0.6
SOX3P41225 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
SOX3P41225 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SOX3P41225 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX3P41225 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SOX3P41225 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.77■□□□□ 0.6
SOX3P41225 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX3P41225 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX3P41225 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX3P41225 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX3P41225 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SOX3P41225 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.76■□□□□ 0.59
SOX3P41225 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SOX3P41225 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.76■□□□□ 0.59
SOX3P41225 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.76■□□□□ 0.59
SOX3P41225 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.76■□□□□ 0.59
SOX3P41225 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX3P41225 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.75■□□□□ 0.59
SOX3P41225 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.75■□□□□ 0.59
SOX3P41225 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX3P41225 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
SOX3P41225 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX3P41225 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX3P41225 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX3P41225 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.75■□□□□ 0.59
SOX3P41225 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX3P41225 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX3P41225 AC087289.5-201ENST00000586076 3175 ntBASIC18.75■□□□□ 0.59
SOX3P41225 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SOX3P41225 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.74■□□□□ 0.59
SOX3P41225 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SOX3P41225 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.74■□□□□ 0.59
SOX3P41225 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SOX3P41225 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.74■□□□□ 0.59
SOX3P41225 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SOX3P41225 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SOX3P41225 C2orf69P4-201ENST00000565394 541 ntBASIC18.74■□□□□ 0.59
SOX3P41225 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.74■□□□□ 0.59
SOX3P41225 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SOX3P41225 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SOX3P41225 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.74■□□□□ 0.59
SOX3P41225 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX3P41225 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 AC112907.3-201ENST00000577781 2400 ntBASIC18.73■□□□□ 0.59
SOX3P41225 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SOX3P41225 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX3P41225 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX3P41225 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.73■□□□□ 0.59
SOX3P41225 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.73■□□□□ 0.59
SOX3P41225 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.73■□□□□ 0.59
SOX3P41225 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SOX3P41225 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX3P41225 MIR2861-201ENST00000636310 90 ntBASIC18.73■□□□□ 0.59
SOX3P41225 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX3P41225 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms