Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.16■□□□□ 0.82
RPA3P35244 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RPA3P35244 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.16■□□□□ 0.82
RPA3P35244 DPP3P2-201ENST00000416030 1696 ntBASIC20.16■□□□□ 0.82
RPA3P35244 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.15■□□□□ 0.82
RPA3P35244 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
RPA3P35244 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.15■□□□□ 0.82
RPA3P35244 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.15■□□□□ 0.82
RPA3P35244 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RPA3P35244 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.15■□□□□ 0.82
RPA3P35244 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
RPA3P35244 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RPA3P35244 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
RPA3P35244 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RPA3P35244 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.14■□□□□ 0.82
RPA3P35244 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
RPA3P35244 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
RPA3P35244 TREX1-205ENST00000625293 1783 ntBASIC20.14■□□□□ 0.81
RPA3P35244 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.14■□□□□ 0.81
RPA3P35244 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.14■□□□□ 0.81
RPA3P35244 AC092666.2-201ENST00000613287 246 ntBASIC20.14■□□□□ 0.81
RPA3P35244 BID-214ENST00000617586 542 ntTSL 5 BASIC20.14■□□□□ 0.81
RPA3P35244 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RPA3P35244 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.14■□□□□ 0.81
RPA3P35244 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.13■□□□□ 0.81
RPA3P35244 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
RPA3P35244 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.13■□□□□ 0.81
RPA3P35244 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.13■□□□□ 0.81
RPA3P35244 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RPA3P35244 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RPA3P35244 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.13■□□□□ 0.81
RPA3P35244 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.13■□□□□ 0.81
RPA3P35244 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
RPA3P35244 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
RPA3P35244 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.13■□□□□ 0.81
RPA3P35244 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RPA3P35244 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.12■□□□□ 0.81
RPA3P35244 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPA3P35244 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
RPA3P35244 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 AC011767.1-201ENST00000617410 1153 ntBASIC20.12■□□□□ 0.81
RPA3P35244 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.12■□□□□ 0.81
RPA3P35244 AC010536.3-201ENST00000620306 533 ntBASIC20.12■□□□□ 0.81
RPA3P35244 AC092437.1-201ENST00000624794 1048 ntBASIC20.12■□□□□ 0.81
RPA3P35244 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RPA3P35244 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.12■□□□□ 0.81
RPA3P35244 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms