Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.42■□□□□ 0.54
ABCD3P28288 AC008403.3-201ENST00000598924 454 ntBASIC18.42■□□□□ 0.54
ABCD3P28288 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCD3P28288 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
ABCD3P28288 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ABCD3P28288 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
ABCD3P28288 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
ABCD3P28288 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.42■□□□□ 0.54
ABCD3P28288 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
ABCD3P28288 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.42■□□□□ 0.54
ABCD3P28288 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.41■□□□□ 0.54
ABCD3P28288 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
ABCD3P28288 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.41■□□□□ 0.54
ABCD3P28288 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.41■□□□□ 0.54
ABCD3P28288 TSPY20P-201ENST00000450910 630 ntBASIC18.41■□□□□ 0.54
ABCD3P28288 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.41■□□□□ 0.54
ABCD3P28288 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
ABCD3P28288 AC008687.6-201ENST00000596318 630 ntBASIC18.41■□□□□ 0.54
ABCD3P28288 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
ABCD3P28288 AL391422.3-201ENST00000603791 2761 ntBASIC18.41■□□□□ 0.54
ABCD3P28288 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.41■□□□□ 0.54
ABCD3P28288 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 KRT16P6-202ENST00000425692 1426 ntBASIC18.4■□□□□ 0.54
ABCD3P28288 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
ABCD3P28288 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 BX119927.1-201ENST00000636596 1552 ntBASIC18.4■□□□□ 0.54
ABCD3P28288 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
ABCD3P28288 POU5F1P3-201ENST00000428824 1078 ntBASIC18.4■□□□□ 0.54
ABCD3P28288 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.4■□□□□ 0.54
ABCD3P28288 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.4■□□□□ 0.54
ABCD3P28288 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
ABCD3P28288 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC18.4■□□□□ 0.54
ABCD3P28288 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
ABCD3P28288 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.4■□□□□ 0.54
ABCD3P28288 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
ABCD3P28288 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
ABCD3P28288 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.39■□□□□ 0.54
ABCD3P28288 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
ABCD3P28288 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
ABCD3P28288 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.39■□□□□ 0.53
ABCD3P28288 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.39■□□□□ 0.53
ABCD3P28288 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.39■□□□□ 0.53
ABCD3P28288 AC120498.8-201ENST00000614275 531 ntBASIC18.39■□□□□ 0.53
ABCD3P28288 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
ABCD3P28288 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms