Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 PCED1CP-201ENST00000419887 785 ntBASIC17.49■□□□□ 0.39
COL8A1P27658 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.49■□□□□ 0.39
COL8A1P27658 CLEC4GP1-201ENST00000596555 870 ntBASIC17.49■□□□□ 0.39
COL8A1P27658 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.49■□□□□ 0.39
COL8A1P27658 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 AL117328.2-201ENST00000624617 1940 ntBASIC17.49■□□□□ 0.39
COL8A1P27658 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL8A1P27658 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 FAM8A6P-201ENST00000407496 1135 ntBASIC17.48■□□□□ 0.39
COL8A1P27658 NIFKP9-201ENST00000419265 221 ntBASIC17.48■□□□□ 0.39
COL8A1P27658 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.48■□□□□ 0.39
COL8A1P27658 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 EGLN1P1-201ENST00000531623 762 ntBASIC17.48■□□□□ 0.39
COL8A1P27658 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.48■□□□□ 0.39
COL8A1P27658 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL8A1P27658 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL8A1P27658 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC17.47■□□□□ 0.39
COL8A1P27658 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL8A1P27658 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.47■□□□□ 0.39
COL8A1P27658 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL8A1P27658 HCG4P8-203ENST00000443049 980 ntBASIC17.47■□□□□ 0.39
COL8A1P27658 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.47■□□□□ 0.39
COL8A1P27658 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.47■□□□□ 0.39
COL8A1P27658 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.47■□□□□ 0.39
COL8A1P27658 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL8A1P27658 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL8A1P27658 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL8A1P27658 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 RNF152P1-201ENST00000397754 604 ntBASIC17.46■□□□□ 0.39
COL8A1P27658 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
COL8A1P27658 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.46■□□□□ 0.39
COL8A1P27658 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
COL8A1P27658 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.46■□□□□ 0.39
COL8A1P27658 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.46■□□□□ 0.39
COL8A1P27658 FAM87A-204ENST00000613235 858 ntBASIC17.46■□□□□ 0.39
COL8A1P27658 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.46■□□□□ 0.39
COL8A1P27658 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
COL8A1P27658 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC17.46■□□□□ 0.39
COL8A1P27658 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL8A1P27658 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL8A1P27658 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.46■□□□□ 0.38
COL8A1P27658 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.45■□□□□ 0.38
COL8A1P27658 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL8A1P27658 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.45■□□□□ 0.38
COL8A1P27658 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms