Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL049637.2-201ENST00000641778 930 ntBASIC19.58■□□□□ 0.72
HOXC4P09017 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC4P09017 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC4P09017 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC4P09017 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HOXC4P09017 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HOXC4P09017 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXC4P09017 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.57■□□□□ 0.72
HOXC4P09017 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.57■□□□□ 0.72
HOXC4P09017 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.57■□□□□ 0.72
HOXC4P09017 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HOXC4P09017 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.56■□□□□ 0.72
HOXC4P09017 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC4P09017 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.56■□□□□ 0.72
HOXC4P09017 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 TFP1-202ENST00000475455 1573 ntBASIC19.56■□□□□ 0.72
HOXC4P09017 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HOXC4P09017 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
HOXC4P09017 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.56■□□□□ 0.72
HOXC4P09017 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC4P09017 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC4P09017 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC4P09017 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC4P09017 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.55■□□□□ 0.72
HOXC4P09017 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.55■□□□□ 0.72
HOXC4P09017 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HOXC4P09017 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
HOXC4P09017 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC4P09017 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HOXC4P09017 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC4P09017 HTR7P1-201ENST00000538670 1336 ntBASIC19.54■□□□□ 0.72
HOXC4P09017 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC4P09017 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC4P09017 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 SNORA78-201ENST00000459373 127 ntBASIC19.54■□□□□ 0.72
HOXC4P09017 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.54■□□□□ 0.72
HOXC4P09017 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
HOXC4P09017 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HOXC4P09017 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
HOXC4P09017 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.54■□□□□ 0.72
HOXC4P09017 AL353708.3-201ENST00000610272 989 ntBASIC19.54■□□□□ 0.72
HOXC4P09017 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.54■□□□□ 0.72
HOXC4P09017 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 AC020907.5-201ENST00000624372 1936 ntBASIC19.54■□□□□ 0.72
HOXC4P09017 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC4P09017 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.54■□□□□ 0.72
HOXC4P09017 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
HOXC4P09017 KRT17P2-201ENST00000300992 1314 ntBASIC19.53■□□□□ 0.72
HOXC4P09017 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC4P09017 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.53■□□□□ 0.72
HOXC4P09017 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HOXC4P09017 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC4P09017 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
HOXC4P09017 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC4P09017 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.53■□□□□ 0.72
HOXC4P09017 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.53■□□□□ 0.72
HOXC4P09017 AF186192.3-201ENST00000583427 947 ntBASIC19.53■□□□□ 0.72
HOXC4P09017 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC4P09017 AC113410.3-201ENST00000623366 203 ntBASIC19.53■□□□□ 0.72
HOXC4P09017 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HOXC4P09017 AC018553.1-201ENST00000616682 1458 ntBASIC19.53■□□□□ 0.72
HOXC4P09017 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms