Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.04■□□□□ 0.8
VIMP08670 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VIMP08670 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.04■□□□□ 0.8
VIMP08670 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.04■□□□□ 0.8
VIMP08670 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 AL356740.2-201ENST00000601559 647 ntBASIC20.04■□□□□ 0.8
VIMP08670 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
VIMP08670 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VIMP08670 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.04■□□□□ 0.8
VIMP08670 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VIMP08670 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.03■□□□□ 0.8
VIMP08670 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VIMP08670 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.03■□□□□ 0.8
VIMP08670 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 SERBP1P1-201ENST00000396021 1160 ntBASIC20.03■□□□□ 0.8
VIMP08670 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 AL138724.1-201ENST00000606771 1088 ntBASIC20.03■□□□□ 0.8
VIMP08670 AC136469.2-201ENST00000623944 1028 ntBASIC20.03■□□□□ 0.8
VIMP08670 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 DPP3P2-201ENST00000416030 1696 ntBASIC20.03■□□□□ 0.8
VIMP08670 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VIMP08670 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VIMP08670 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VIMP08670 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
VIMP08670 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
VIMP08670 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.02■□□□□ 0.8
VIMP08670 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.02■□□□□ 0.8
VIMP08670 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VIMP08670 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
VIMP08670 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.02■□□□□ 0.79
VIMP08670 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.02■□□□□ 0.79
VIMP08670 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.02■□□□□ 0.79
VIMP08670 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.02■□□□□ 0.79
VIMP08670 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.02■□□□□ 0.79
VIMP08670 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
VIMP08670 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
VIMP08670 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.01■□□□□ 0.79
VIMP08670 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
VIMP08670 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
VIMP08670 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.01■□□□□ 0.79
VIMP08670 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.01■□□□□ 0.79
VIMP08670 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.01■□□□□ 0.79
VIMP08670 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
VIMP08670 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
VIMP08670 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.01■□□□□ 0.79
VIMP08670 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VIMP08670 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 BX119927.1-201ENST00000636596 1552 ntBASIC20■□□□□ 0.79
VIMP08670 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
VIMP08670 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20■□□□□ 0.79
VIMP08670 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20■□□□□ 0.79
VIMP08670 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
VIMP08670 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
VIMP08670 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
VIMP08670 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20■□□□□ 0.79
VIMP08670 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20■□□□□ 0.79
VIMP08670 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
VIMP08670 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VIMP08670 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
VIMP08670 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.99■□□□□ 0.79
VIMP08670 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
VIMP08670 AC005224.4-201ENST00000583262 1652 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms