Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
CCDC188H7C350 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC188H7C350 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC188H7C350 AC087633.2-202ENST00000565166 1439 ntBASIC20.77■□□□□ 0.91
CCDC188H7C350 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.77■□□□□ 0.91
CCDC188H7C350 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC188H7C350 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC188H7C350 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC188H7C350 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC188H7C350 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CCDC188H7C350 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.76■□□□□ 0.91
CCDC188H7C350 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC188H7C350 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC188H7C350 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CCDC188H7C350 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC188H7C350 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC188H7C350 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC188H7C350 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC188H7C350 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC188H7C350 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
CCDC188H7C350 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC188H7C350 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC188H7C350 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC188H7C350 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC188H7C350 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC188H7C350 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC188H7C350 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC188H7C350 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC188H7C350 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC188H7C350 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC188H7C350 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC188H7C350 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC188H7C350 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC188H7C350 AC019069.1-201ENST00000610008 1333 ntBASIC20.74■□□□□ 0.91
CCDC188H7C350 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC188H7C350 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC188H7C350 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.73■□□□□ 0.91
CCDC188H7C350 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC188H7C350 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.73■□□□□ 0.91
CCDC188H7C350 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.73■□□□□ 0.91
CCDC188H7C350 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC188H7C350 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC188H7C350 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC188H7C350 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC188H7C350 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
CCDC188H7C350 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC188H7C350 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC188H7C350 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC188H7C350 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms