Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AP005242.2-201ENST00000580065 1175 ntBASIC34.9■■■■□ 3.18
CCDC88BA6NC98 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC34.9■■■■□ 3.18
CCDC88BA6NC98 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC34.89■■■■□ 3.18
CCDC88BA6NC98 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 KRT8P17-201ENST00000453110 1448 ntBASIC34.88■■■■□ 3.17
CCDC88BA6NC98 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 AL031985.4-201ENST00000642138 673 ntBASIC34.88■■■■□ 3.17
CCDC88BA6NC98 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC34.88■■■■□ 3.17
CCDC88BA6NC98 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88BA6NC98 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88BA6NC98 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC34.87■■■■□ 3.17
CCDC88BA6NC98 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC34.87■■■■□ 3.17
CCDC88BA6NC98 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC34.87■■■■□ 3.17
CCDC88BA6NC98 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 AL137013.1-201ENST00000432946 1228 ntBASIC34.86■■■■□ 3.17
CCDC88BA6NC98 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 DGCR10-201ENST00000609839 495 ntBASIC34.86■■■■□ 3.17
CCDC88BA6NC98 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC34.86■■■■□ 3.17
CCDC88BA6NC98 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 AC004980.1-204ENST00000429707 299 ntBASIC34.85■■■■□ 3.17
CCDC88BA6NC98 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
CCDC88BA6NC98 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 LTBR-211ENST00000543190 785 ntTSL 3 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 NTF6B-201ENST00000591913 560 ntBASIC34.84■■■■□ 3.17
CCDC88BA6NC98 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 AC005229.4-201ENST00000610085 2198 ntBASIC34.84■■■■□ 3.17
CCDC88BA6NC98 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 AC011506.1-201ENST00000474329 610 ntBASIC34.84■■■■□ 3.17
CCDC88BA6NC98 WWOX-216ENST00000569818 525 ntBASIC34.84■■■■□ 3.17
CCDC88BA6NC98 RMI2-205ENST00000576027 818 ntTSL 2 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC34.84■■■■□ 3.17
CCDC88BA6NC98 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 AC116351.2-201ENST00000606540 1585 ntBASIC34.83■■■■□ 3.17
CCDC88BA6NC98 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 PLK5-205ENST00000642079 1969 ntBASIC34.83■■■■□ 3.17
CCDC88BA6NC98 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 FBXW4P1-201ENST00000426721 2239 ntBASIC34.83■■■■□ 3.17
CCDC88BA6NC98 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC34.83■■■■□ 3.17
CCDC88BA6NC98 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC34.82■■■■□ 3.16
CCDC88BA6NC98 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 FSCN1P1-201ENST00000568912 1481 ntBASIC34.81■■■■□ 3.16
CCDC88BA6NC98 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
CCDC88BA6NC98 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC34.81■■■■□ 3.16
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms