Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC009656.1-201ENST00000531966 478 ntTSL 3 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC008013.2-201ENST00000537555 348 ntTSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC140118.1-201ENST00000539209 532 ntTSL 4 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC067735.1-201ENST00000551152 526 ntTSL 2 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AL137802.2-201ENST00000562878 1110 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC090286.3-201ENST00000573133 187 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC006120.1-201ENST00000579375 546 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 MIR5705-201ENST00000579870 89 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 MIR4437-201ENST00000581331 60 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 ZNF561-AS1-208ENST00000592851 782 ntTSL 3 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC011487.2-201ENST00000600193 1228 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC012370.2-202ENST00000600508 1099 ntTSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AL096855.2-201ENST00000605785 369 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC103724.4-201ENST00000605981 292 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 MIR6736-201ENST00000616799 59 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC068234.2-201ENST00000619646 522 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 METTL15-210ENST00000634721 1182 ntTSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 HCFC2P1-201ENST00000392864 1592 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AL161891.1-201ENST00000621575 4636 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 VTA1-202ENST00000367630 7028 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC022507.1-201ENST00000548349 1505 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 AC018688.1-201ENST00000636528 1754 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC7.1□□□□□ -1.27
VMP1Q96GC9 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
VMP1Q96GC9 AL133243.4-201ENST00000623116 3109 ntBASIC7.1□□□□□ -1.27
VMP1Q96GC9 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LINC01747-203ENST00000634603 1377 ntTSL 4 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 FCGR1B-210ENST00000623603 1581 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 SP140-202ENST00000373645 814 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC243547.1-201ENST00000415065 408 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC017104.2-201ENST00000417000 321 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 RNF11P2-201ENST00000427702 440 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC009299.1-201ENST00000429684 717 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 SLC25A24P1-202ENST00000434803 1220 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 FDPSP8-201ENST00000438304 1089 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AL031736.1-201ENST00000449688 618 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC108868.2-201ENST00000451464 511 ntTSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 TCEAL4P1-201ENST00000453620 588 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 TDGF1P6-201ENST00000463873 448 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 RN7SL282P-201ENST00000479676 297 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 RN7SL647P-201ENST00000485429 300 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 TECRP2-201ENST00000503270 928 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC112184.1-201ENST00000505179 312 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC106774.2-201ENST00000510266 406 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 SUMO2P7-201ENST00000511179 285 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 HMGN2P47-201ENST00000559378 272 ntBASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC009063.2-201ENST00000563981 906 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC137735.1-201ENST00000581911 419 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 STARD6-204ENST00000584040 660 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AC005154.6-201ENST00000598361 687 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LINC00595-211ENST00000634735 535 ntTSL 3 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CCNT1-206ENST00000640148 596 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 VEGFD-201ENST00000297904 2037 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 SEC23IP-208ENST00000543134 1461 ntTSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
VMP1Q96GC9 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
VMP1Q96GC9 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms