Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 ERAP1-202ENST00000443439 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 SLC24A1-211ENST00000544319 3169 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 RNA5SP172-201ENST00000365061 118 ntBASIC11.68□□□□□ -0.54
CUX1P39880 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
CUX1P39880 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC11.68□□□□□ -0.54
CUX1P39880 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 PIP5K1P2-201ENST00000437005 1120 ntBASIC11.68□□□□□ -0.54
CUX1P39880 RPL23AP28-201ENST00000448062 470 ntBASIC11.68□□□□□ -0.54
CUX1P39880 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 MAST4-IT1-201ENST00000514241 658 ntBASIC11.68□□□□□ -0.54
CUX1P39880 HSD3BP3-201ENST00000514706 994 ntBASIC11.68□□□□□ -0.54
CUX1P39880 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC11.68□□□□□ -0.54
CUX1P39880 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC11.68□□□□□ -0.54
CUX1P39880 STXBP5L-205ENST00000472879 3067 ntTSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 LINC02210-213ENST00000591271 9678 ntTSL 3 BASIC11.68□□□□□ -0.54
CUX1P39880 MYOCD-201ENST00000343344 2817 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 ICK-201ENST00000350082 6116 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
CUX1P39880 BAAT-201ENST00000259407 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
CUX1P39880 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC11.68□□□□□ -0.54
CUX1P39880 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 SCARB2-211ENST00000638603 4284 ntTSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 CD200-202ENST00000383681 1997 ntTSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 FCGR3B-209ENST00000614870 1993 ntTSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 ALDH1L2-201ENST00000258494 7547 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 TNFSF15-201ENST00000374044 2789 ntBASIC11.67□□□□□ -0.54
CUX1P39880 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC11.67□□□□□ -0.54
CUX1P39880 INTS7-204ENST00000440600 3136 ntTSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 CYP4F30P-203ENST00000438109 2250 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 NTRK3-201ENST00000317501 3826 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 PPIAP26-201ENST00000377951 522 ntBASIC11.67□□□□□ -0.54
CUX1P39880 AC092642.1-201ENST00000392417 425 ntBASIC11.67□□□□□ -0.54
CUX1P39880 VN1R53P-201ENST00000429536 957 ntBASIC11.67□□□□□ -0.54
CUX1P39880 PFN1P11-201ENST00000445829 389 ntBASIC11.67□□□□□ -0.54
CUX1P39880 AL122008.4-201ENST00000446433 388 ntTSL 3 BASIC11.67□□□□□ -0.54
CUX1P39880 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC11.67□□□□□ -0.54
CUX1P39880 AL078601.3-201ENST00000573303 535 ntBASIC11.67□□□□□ -0.54
CUX1P39880 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 AC015911.3-201ENST00000592908 849 ntTSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC11.67□□□□□ -0.54
CUX1P39880 CNTNAP3P1-201ENST00000616657 906 ntBASIC11.67□□□□□ -0.54
CUX1P39880 MIR6861-201ENST00000618657 64 ntBASIC11.67□□□□□ -0.54
CUX1P39880 AC010325.3-201ENST00000641084 394 ntBASIC11.67□□□□□ -0.54
CUX1P39880 GK5-201ENST00000392993 9837 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 AC090771.1-201ENST00000585803 1618 ntBASIC11.67□□□□□ -0.54
CUX1P39880 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 ARHGAP42P4-201ENST00000549782 2934 ntBASIC11.67□□□□□ -0.54
CUX1P39880 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 SLIT3-202ENST00000404867 8903 ntTSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 SIDT2-219ENST00000620360 3924 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 ARID1B-232ENST00000637904 5913 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 PCDH15-233ENST00000621708 5700 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
CUX1P39880 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC11.67□□□□□ -0.54
CUX1P39880 CDH11-202ENST00000394156 6874 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 GCNT2-216ENST00000495262 2214 ntAPPRIS ALT1 TSL 2 BASIC11.67□□□□□ -0.54
CUX1P39880 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
CUX1P39880 FARSB-201ENST00000281828 3369 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 AGPAT4-201ENST00000320285 7865 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 HSP90AB7P-201ENST00000450068 2454 ntBASIC11.66□□□□□ -0.54
CUX1P39880 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC11.66□□□□□ -0.54
CUX1P39880 GTF2IP14-201ENST00000441415 586 ntBASIC11.66□□□□□ -0.54
CUX1P39880 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC11.66□□□□□ -0.54
CUX1P39880 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC11.66□□□□□ -0.54
CUX1P39880 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
CUX1P39880 AC008443.6-204ENST00000511517 738 ntTSL 2 BASIC11.66□□□□□ -0.54
CUX1P39880 AC027801.3-201ENST00000515049 698 ntBASIC11.66□□□□□ -0.54
CUX1P39880 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC11.66□□□□□ -0.54
CUX1P39880 RN7SL261P-201ENST00000613441 282 ntBASIC11.66□□□□□ -0.54
CUX1P39880 AL049541.2-201ENST00000626377 555 ntBASIC11.66□□□□□ -0.54
CUX1P39880 AL512662.1-201ENST00000624850 2251 ntBASIC11.66□□□□□ -0.54
CUX1P39880 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 SLF2-201ENST00000238961 7288 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC11.66□□□□□ -0.54
CUX1P39880 R3HDM2P1-201ENST00000505381 1960 ntBASIC11.66□□□□□ -0.54
CUX1P39880 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 TMEM33-203ENST00000504986 7482 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
CUX1P39880 ATP5A1P8-201ENST00000423669 1291 ntBASIC11.65□□□□□ -0.54
CUX1P39880 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC11.65□□□□□ -0.54
CUX1P39880 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC11.65□□□□□ -0.54
CUX1P39880 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC11.65□□□□□ -0.54
CUX1P39880 VNN3-210ENST00000450865 596 ntTSL 4 BASIC11.65□□□□□ -0.54
CUX1P39880 RARRES2P3-201ENST00000457739 473 ntBASIC11.65□□□□□ -0.54
CUX1P39880 H3F3AP5-201ENST00000475267 429 ntBASIC11.65□□□□□ -0.54
CUX1P39880 RN7SL362P-201ENST00000494228 267 ntBASIC11.65□□□□□ -0.54
CUX1P39880 AC091874.2-201ENST00000505889 720 ntBASIC11.65□□□□□ -0.54
CUX1P39880 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
CUX1P39880 AC011853.1-201ENST00000518911 454 ntBASIC11.65□□□□□ -0.54
CUX1P39880 TRIM51DP-201ENST00000529746 596 ntBASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms