Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC091805.2-201ENST00000603848 235 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC073137.1-201ENST00000605636 634 ntBASIC8.08□□□□□ -1.12
MSX1P28360 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC8.08□□□□□ -1.12
MSX1P28360 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC8.08□□□□□ -1.12
MSX1P28360 RN7SL536P-201ENST00000612366 290 ntBASIC8.08□□□□□ -1.12
MSX1P28360 U4.5-201ENST00000617137 123 ntBASIC8.08□□□□□ -1.12
MSX1P28360 FLT1-208ENST00000617835 434 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 RN7SL545P-201ENST00000620547 290 ntBASIC8.08□□□□□ -1.12
MSX1P28360 RN7SL759P-201ENST00000620768 290 ntBASIC8.08□□□□□ -1.12
MSX1P28360 MIR6754-201ENST00000621121 66 ntBASIC8.08□□□□□ -1.12
MSX1P28360 CU633967.1-202ENST00000623449 560 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AC099654.14-201ENST00000638599 341 ntBASIC8.08□□□□□ -1.12
MSX1P28360 SORBS2-206ENST00000393528 3043 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 AL356317.1-201ENST00000396110 1436 ntBASIC8.08□□□□□ -1.12
MSX1P28360 IL2RA-202ENST00000379954 1562 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 TDG-202ENST00000392872 3251 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 GBP5-201ENST00000370459 2011 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 LINC01180-201ENST00000589259 2025 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 TSPAN31-206ENST00000547992 3434 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 RBBP9-201ENST00000337227 3861 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 LPP-208ENST00000448637 5835 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 LPAL2-205ENST00000639825 1536 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 LNP1-203ENST00000489752 1813 ntTSL 5 BASIC8.08□□□□□ -1.12
MSX1P28360 CDC25C-201ENST00000323760 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 LINC01616-201ENST00000561816 2280 ntBASIC8.08□□□□□ -1.12
MSX1P28360 IARS2P1-201ENST00000508226 3173 ntBASIC8.08□□□□□ -1.12
MSX1P28360 EXOC6-204ENST00000443748 3310 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
MSX1P28360 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 RAD54L-201ENST00000371975 3108 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 AOAH-211ENST00000617537 2381 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 GPR33-201ENST00000399285 1343 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 ITGA6-206ENST00000442250 3393 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AMPD3-208ENST00000528723 2753 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 PDE6A-204ENST00000613228 5398 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AL353132.1-201ENST00000415260 2043 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ERC1-213ENST00000543086 9241 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 ZNF849P-201ENST00000594711 1566 ntBASIC8.07□□□□□ -1.12
MSX1P28360 SGK1-201ENST00000237305 2401 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
MSX1P28360 FGF7P2-201ENST00000332473 296 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AL672167.1-206ENST00000356293 943 ntBASIC8.07□□□□□ -1.12
MSX1P28360 HTR4-202ENST00000362016 2979 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 LINC00970-201ENST00000366408 1129 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 ENSA-209ENST00000369016 923 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 GSTA5-202ENST00000370989 892 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
MSX1P28360 TRBV23OR9-2-201ENST00000390389 335 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
MSX1P28360 LDHAP4-201ENST00000397561 998 ntBASIC8.07□□□□□ -1.12
MSX1P28360 NPM1P36-201ENST00000415681 835 ntBASIC8.07□□□□□ -1.12
MSX1P28360 OR2L6P-201ENST00000416377 940 ntBASIC8.07□□□□□ -1.12
MSX1P28360 RPSAP2-201ENST00000416785 888 ntBASIC8.07□□□□□ -1.12
MSX1P28360 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AC034228.1-201ENST00000424244 923 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
MSX1P28360 MTCO2P11-201ENST00000431069 680 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ARL6IP1P2-201ENST00000431356 563 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 AC018641.1-201ENST00000435950 796 ntBASIC8.07□□□□□ -1.12
MSX1P28360 RPS29P3-201ENST00000439929 171 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AC004865.1-201ENST00000442276 1003 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 HMGB1P48-201ENST00000446155 598 ntBASIC8.07□□□□□ -1.12
MSX1P28360 EEF1E1P1-201ENST00000446998 430 ntBASIC8.07□□□□□ -1.12
MSX1P28360 SUMO2P10-201ENST00000452006 288 ntBASIC8.07□□□□□ -1.12
MSX1P28360 TRBV21-1-201ENST00000453262 348 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ARHGAP31-AS1-201ENST00000466292 624 ntTSL 4 BASIC8.07□□□□□ -1.12
MSX1P28360 AC004917.1-202ENST00000475791 760 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 PDCL3P4-201ENST00000489621 720 ntBASIC8.07□□□□□ -1.12
MSX1P28360 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 HPRT1P2-201ENST00000505250 544 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AC097522.1-201ENST00000507811 1042 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC8.07□□□□□ -1.12
MSX1P28360 DCAF13-203ENST00000519682 837 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC8.07□□□□□ -1.12
MSX1P28360 AP003392.2-201ENST00000527269 208 ntBASIC8.07□□□□□ -1.12
MSX1P28360 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AC104383.1-201ENST00000530297 370 ntBASIC8.07□□□□□ -1.12
MSX1P28360 OR4A40P-201ENST00000533878 948 ntBASIC8.07□□□□□ -1.12
MSX1P28360 GLYCAM1-201ENST00000546596 285 ntBASIC8.07□□□□□ -1.12
MSX1P28360 PCED1B-AS1-204ENST00000547851 780 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 AC011611.5-201ENST00000552477 578 ntBASIC8.07□□□□□ -1.12
MSX1P28360 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC8.07□□□□□ -1.12
MSX1P28360 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC8.07□□□□□ -1.12
MSX1P28360 AC126323.1-201ENST00000561706 611 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 AC138512.1-201ENST00000563190 434 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 DPPA2P4-201ENST00000563717 878 ntBASIC8.07□□□□□ -1.12
MSX1P28360 LINC01572-203ENST00000563823 563 ntTSL 4 BASIC8.07□□□□□ -1.12
MSX1P28360 HMGN2P46-207ENST00000568669 388 ntTSL 3 BASIC8.07□□□□□ -1.12
MSX1P28360 FGF7P1-201ENST00000582820 288 ntBASIC8.07□□□□□ -1.12
MSX1P28360 ABBA01006766.1-201ENST00000584728 294 ntBASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms