Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 AC242852.2-201ENST00000615738 1807 ntBASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
PCDHGA1Q9Y5H4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 DUX4L26-201ENST00000489078 1255 ntBASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 MIR2861-201ENST00000636310 90 ntBASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PCDHGA1Q9Y5H4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.27■□□□□ 0.67
PCDHGA1Q9Y5H4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
PCDHGA1Q9Y5H4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PCDHGA1Q9Y5H4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
PCDHGA1Q9Y5H4 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 AL390955.1-201ENST00000428694 934 ntBASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PCDHGA1Q9Y5H4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDHGA1Q9Y5H4 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PCDHGA1Q9Y5H4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PCDHGA1Q9Y5H4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDHGA1Q9Y5H4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDHGA1Q9Y5H4 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms