Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL031963.3-201ENST00000606441 850 ntBASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LIMD1Q9UGP4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 AC113347.1-201ENST00000413321 391 ntBASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LIMD1Q9UGP4 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 AL137013.1-201ENST00000432946 1228 ntBASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMD1Q9UGP4 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 CYP2D8P-201ENST00000433633 1490 ntBASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 AP002982.1-201ENST00000492365 877 ntBASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 AL137060.1-201ENST00000618151 2648 ntBASIC20.9■□□□□ 0.94
LIMD1Q9UGP4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
LIMD1Q9UGP4 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 KRT18P22-201ENST00000402024 1347 ntBASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 AL390955.1-201ENST00000428694 934 ntBASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 NAPSB-206ENST00000562112 1266 ntBASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMD1Q9UGP4 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 TERF1P1-201ENST00000311003 1181 ntBASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 NTF6B-201ENST00000591913 560 ntBASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 AC004264.1-201ENST00000608354 794 ntBASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMD1Q9UGP4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms