Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
BLOC1S4Q9NUP1 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
BLOC1S4Q9NUP1 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
BLOC1S4Q9NUP1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
BLOC1S4Q9NUP1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AL355802.2-201ENST00000402069 882 ntBASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 AC133041.1-202ENST00000642053 222 ntBASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 LBX2-AS1-202ENST00000603175 2083 ntBASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
BLOC1S4Q9NUP1 PKD1P6-201ENST00000343738 4769 ntBASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.31■■□□□ 1.16
BLOC1S4Q9NUP1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
BLOC1S4Q9NUP1 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BLOC1S4Q9NUP1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 AC125437.2-201ENST00000625180 2167 ntBASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 HLA-G-202ENST00000376815 851 ntBASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 HLA-G-203ENST00000376818 1127 ntBASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 AC005829.2-201ENST00000571422 1056 ntBASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BLOC1S4Q9NUP1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BLOC1S4Q9NUP1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms