Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 FAM197Y1-201ENST00000421178 764 ntBASIC23.76■■□□□ 1.39
DDX4Q9NQI0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 AP003071.4-201ENST00000562276 1284 ntBASIC23.76■■□□□ 1.39
DDX4Q9NQI0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 LINC01023-201ENST00000606054 436 ntBASIC23.76■■□□□ 1.39
DDX4Q9NQI0 CD177P1-201ENST00000606252 935 ntBASIC23.76■■□□□ 1.39
DDX4Q9NQI0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.76■■□□□ 1.39
DDX4Q9NQI0 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 AC007225.1-201ENST00000566331 1836 ntBASIC23.75■■□□□ 1.39
DDX4Q9NQI0 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 DPP3P2-201ENST00000416030 1696 ntBASIC23.75■■□□□ 1.39
DDX4Q9NQI0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
DDX4Q9NQI0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 AL353708.3-201ENST00000610272 989 ntBASIC23.74■■□□□ 1.39
DDX4Q9NQI0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.74■■□□□ 1.39
DDX4Q9NQI0 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 AC133561.5-201ENST00000635547 218 ntBASIC23.73■■□□□ 1.39
DDX4Q9NQI0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.73■■□□□ 1.39
DDX4Q9NQI0 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 FAM210CP-201ENST00000445714 574 ntBASIC23.72■■□□□ 1.39
DDX4Q9NQI0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 AC012306.2-201ENST00000609350 630 ntBASIC23.72■■□□□ 1.39
DDX4Q9NQI0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
DDX4Q9NQI0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
DDX4Q9NQI0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms