Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 AC092119.3-201ENST00000612618 583 ntBASIC18.82■□□□□ 0.6
CHD8Q9HCK8 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CHD8Q9HCK8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 AC068473.5-201ENST00000616428 2072 ntBASIC18.81■□□□□ 0.6
CHD8Q9HCK8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 CCR12P-201ENST00000446203 998 ntBASIC18.81■□□□□ 0.6
CHD8Q9HCK8 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.81■□□□□ 0.6
CHD8Q9HCK8 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 AC139530.1-201ENST00000575312 1977 ntBASIC18.8■□□□□ 0.6
CHD8Q9HCK8 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHD8Q9HCK8 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 FAM220CP-201ENST00000395253 831 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 AC092338.2-201ENST00000568827 1415 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 AC004870.1-201ENST00000315132 882 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 AL023803.3-201ENST00000615559 522 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.79■□□□□ 0.6
CHD8Q9HCK8 AC141257.4-201ENST00000634557 245 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 AC136944.6-201ENST00000634818 245 ntBASIC18.79■□□□□ 0.6
CHD8Q9HCK8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 AP002469.2-201ENST00000531724 424 ntBASIC18.78■□□□□ 0.6
CHD8Q9HCK8 AL441883.1-201ENST00000566170 1045 ntBASIC18.78■□□□□ 0.6
CHD8Q9HCK8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.78■□□□□ 0.6
CHD8Q9HCK8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHD8Q9HCK8 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 AL732292.2-201ENST00000609649 430 ntBASIC18.77■□□□□ 0.6
CHD8Q9HCK8 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHD8Q9HCK8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHD8Q9HCK8 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHD8Q9HCK8 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHD8Q9HCK8 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.77■□□□□ 0.59
CHD8Q9HCK8 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms