Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.16■□□□□ 0.98
CDX2Q99626 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.16■□□□□ 0.98
CDX2Q99626 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 AL441883.1-201ENST00000566170 1045 ntBASIC21.16■□□□□ 0.98
CDX2Q99626 PRELID1P1-202ENST00000567272 903 ntBASIC21.16■□□□□ 0.98
CDX2Q99626 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.16■□□□□ 0.98
CDX2Q99626 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDX2Q99626 AC093323.1-202ENST00000635031 2045 ntBASIC21.16■□□□□ 0.98
CDX2Q99626 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.15■□□□□ 0.98
CDX2Q99626 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.15■□□□□ 0.98
CDX2Q99626 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CDX2Q99626 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 AC004980.1-204ENST00000429707 299 ntBASIC21.15■□□□□ 0.98
CDX2Q99626 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 KRT18P38-201ENST00000449496 1282 ntBASIC21.15■□□□□ 0.98
CDX2Q99626 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 CKBP1-201ENST00000565489 1086 ntBASIC21.15■□□□□ 0.98
CDX2Q99626 C1QL1P1-201ENST00000568105 661 ntBASIC21.15■□□□□ 0.98
CDX2Q99626 AC111152.3-201ENST00000569699 673 ntBASIC21.15■□□□□ 0.98
CDX2Q99626 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.15■□□□□ 0.98
CDX2Q99626 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.15■□□□□ 0.98
CDX2Q99626 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDX2Q99626 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDX2Q99626 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDX2Q99626 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
CDX2Q99626 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CDX2Q99626 SLC25A1P2-201ENST00000430693 912 ntBASIC21.14■□□□□ 0.97
CDX2Q99626 FAAHP1-202ENST00000446499 1238 ntBASIC21.14■□□□□ 0.97
CDX2Q99626 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.14■□□□□ 0.97
CDX2Q99626 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.14■□□□□ 0.97
CDX2Q99626 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.14■□□□□ 0.97
CDX2Q99626 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 MIR3652-201ENST00000579335 131 ntBASIC21.14■□□□□ 0.97
CDX2Q99626 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 AP000692.2-201ENST00000608391 879 ntBASIC21.14■□□□□ 0.97
CDX2Q99626 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDX2Q99626 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.14■□□□□ 0.97
CDX2Q99626 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.13■□□□□ 0.97
CDX2Q99626 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CDX2Q99626 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.13■□□□□ 0.97
CDX2Q99626 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.13■□□□□ 0.97
CDX2Q99626 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.13■□□□□ 0.97
CDX2Q99626 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CDX2Q99626 AL023973.1-201ENST00000624619 620 ntBASIC21.13■□□□□ 0.97
CDX2Q99626 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.13■□□□□ 0.97
CDX2Q99626 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
CDX2Q99626 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.13■□□□□ 0.97
CDX2Q99626 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDX2Q99626 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDX2Q99626 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CDX2Q99626 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC21.12■□□□□ 0.97
CDX2Q99626 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CDX2Q99626 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 AC008622.2-201ENST00000617006 1229 ntBASIC21.12■□□□□ 0.97
CDX2Q99626 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
CDX2Q99626 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CDX2Q99626 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CDX2Q99626 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.11■□□□□ 0.97
CDX2Q99626 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CDX2Q99626 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.11■□□□□ 0.97
CDX2Q99626 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC21.11■□□□□ 0.97
CDX2Q99626 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.11■□□□□ 0.97
CDX2Q99626 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.11■□□□□ 0.97
CDX2Q99626 AC092119.3-201ENST00000612618 583 ntBASIC21.11■□□□□ 0.97
CDX2Q99626 AC131212.4-201ENST00000623606 975 ntBASIC21.11■□□□□ 0.97
CDX2Q99626 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CDX2Q99626 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX2Q99626 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CDX2Q99626 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.11■□□□□ 0.97
CDX2Q99626 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CDX2Q99626 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CDX2Q99626 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms