Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 AL353807.1-201ENST00000427475 662 ntBASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 TK2-213ENST00000563369 882 ntTSL 5 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 MIR6786-201ENST00000616843 113 ntBASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USHBP1Q8N6Y0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 AC012676.1-201ENST00000574705 1949 ntBASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
USHBP1Q8N6Y0 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 AP002982.1-201ENST00000492365 877 ntBASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 NUDT16P1-203ENST00000513809 620 ntBASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 AL031963.3-201ENST00000606441 850 ntBASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
USHBP1Q8N6Y0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.84
USHBP1Q8N6Y0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 AL390955.1-201ENST00000428694 934 ntBASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 AC004264.1-201ENST00000608354 794 ntBASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 WWC2-AS2-201ENST00000578387 2183 ntBASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 FP700111.2-201ENST00000619190 1892 ntBASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USHBP1Q8N6Y0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 HLA-G-202ENST00000376815 851 ntBASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 HLA-G-203ENST00000376818 1127 ntBASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 AC005229.4-201ENST00000610085 2198 ntBASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
USHBP1Q8N6Y0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 KRT8P20-201ENST00000423953 1409 ntBASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 TMPOP1-202ENST00000424642 1267 ntBASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USHBP1Q8N6Y0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 CR392000.1-201ENST00000624770 1228 ntBASIC26.48■■□□□ 1.83
USHBP1Q8N6Y0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms