Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SLC44A3Q8N4M1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 HLA-G-202ENST00000376815 851 ntBASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 HLA-G-203ENST00000376818 1127 ntBASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SLC44A3Q8N4M1 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SLC44A3Q8N4M1 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SLC44A3Q8N4M1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SLC44A3Q8N4M1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.58■□□□□ 0.88
SLC44A3Q8N4M1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.58■□□□□ 0.88
SLC44A3Q8N4M1 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.57■□□□□ 0.88
SLC44A3Q8N4M1 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 WWOX-216ENST00000569818 525 ntBASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.56■□□□□ 0.88
SLC44A3Q8N4M1 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 LIN28AP1-201ENST00000429574 405 ntBASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 AL031985.4-201ENST00000642138 673 ntBASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.55■□□□□ 0.88
SLC44A3Q8N4M1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.54■□□□□ 0.88
SLC44A3Q8N4M1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms