Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VRK3Q8IV63 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.61■□□□□ 0.73
VRK3Q8IV63 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 HLA-B-256ENST00000639848 1089 ntBASIC19.6■□□□□ 0.73
VRK3Q8IV63 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 TCF3P1-201ENST00000423021 1937 ntBASIC19.6■□□□□ 0.73
VRK3Q8IV63 AC092368.3-202ENST00000574180 1591 ntBASIC19.6■□□□□ 0.73
VRK3Q8IV63 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
VRK3Q8IV63 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VRK3Q8IV63 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VRK3Q8IV63 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.59■□□□□ 0.73
VRK3Q8IV63 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 AC060766.5-201ENST00000590539 871 ntBASIC19.59■□□□□ 0.73
VRK3Q8IV63 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.59■□□□□ 0.73
VRK3Q8IV63 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VRK3Q8IV63 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.58■□□□□ 0.73
VRK3Q8IV63 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
VRK3Q8IV63 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VRK3Q8IV63 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.58■□□□□ 0.72
VRK3Q8IV63 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.58■□□□□ 0.72
VRK3Q8IV63 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VRK3Q8IV63 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
VRK3Q8IV63 PNMA6B-201ENST00000538162 1200 ntBASIC19.58■□□□□ 0.72
VRK3Q8IV63 AC005829.2-201ENST00000571422 1056 ntBASIC19.58■□□□□ 0.72
VRK3Q8IV63 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.58■□□□□ 0.72
VRK3Q8IV63 AC006557.6-201ENST00000623071 864 ntBASIC19.58■□□□□ 0.72
VRK3Q8IV63 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
VRK3Q8IV63 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VRK3Q8IV63 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VRK3Q8IV63 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VRK3Q8IV63 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.58■□□□□ 0.72
VRK3Q8IV63 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
VRK3Q8IV63 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VRK3Q8IV63 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms