Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
USP53Q70EK8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.42■□□□□ 0.7
USP53Q70EK8 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
USP53Q70EK8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.42■□□□□ 0.7
USP53Q70EK8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.42■□□□□ 0.7
USP53Q70EK8 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.42■□□□□ 0.7
USP53Q70EK8 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.42■□□□□ 0.7
USP53Q70EK8 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.42■□□□□ 0.7
USP53Q70EK8 AC006128.1-201ENST00000624704 1661 ntBASIC19.42■□□□□ 0.7
USP53Q70EK8 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP53Q70EK8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.42■□□□□ 0.7
USP53Q70EK8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
USP53Q70EK8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.41■□□□□ 0.7
USP53Q70EK8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.41■□□□□ 0.7
USP53Q70EK8 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.41■□□□□ 0.7
USP53Q70EK8 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.41■□□□□ 0.7
USP53Q70EK8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.41■□□□□ 0.7
USP53Q70EK8 KRT18P21-201ENST00000515767 1272 ntBASIC19.41■□□□□ 0.7
USP53Q70EK8 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.41■□□□□ 0.7
USP53Q70EK8 PRKY-204ENST00000533551 1019 ntBASIC19.41■□□□□ 0.7
USP53Q70EK8 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP53Q70EK8 AC124283.5-201ENST00000624661 1809 ntBASIC19.41■□□□□ 0.7
USP53Q70EK8 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.41■□□□□ 0.7
USP53Q70EK8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC19.41■□□□□ 0.7
USP53Q70EK8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP53Q70EK8 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
USP53Q70EK8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
USP53Q70EK8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.4■□□□□ 0.7
USP53Q70EK8 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP53Q70EK8 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.4■□□□□ 0.7
USP53Q70EK8 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.4■□□□□ 0.7
USP53Q70EK8 AC023632.3-201ENST00000521633 145 ntBASIC19.4■□□□□ 0.7
USP53Q70EK8 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.4■□□□□ 0.7
USP53Q70EK8 AC233702.5-201ENST00000584107 538 ntBASIC19.4■□□□□ 0.7
USP53Q70EK8 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.4■□□□□ 0.7
USP53Q70EK8 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP53Q70EK8 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.4■□□□□ 0.7
USP53Q70EK8 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.39■□□□□ 0.7
USP53Q70EK8 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 AC012618.2-201ENST00000428058 849 ntBASIC19.39■□□□□ 0.69
USP53Q70EK8 TSPY7P-201ENST00000431358 1114 ntBASIC19.39■□□□□ 0.69
USP53Q70EK8 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.39■□□□□ 0.69
USP53Q70EK8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP53Q70EK8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USP53Q70EK8 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USP53Q70EK8 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.38■□□□□ 0.69
USP53Q70EK8 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.38■□□□□ 0.69
USP53Q70EK8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
USP53Q70EK8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
USP53Q70EK8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP53Q70EK8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP53Q70EK8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.37■□□□□ 0.69
USP53Q70EK8 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP53Q70EK8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP53Q70EK8 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP53Q70EK8 KRT17P2-201ENST00000300992 1314 ntBASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms