Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 BX119927.1-201ENST00000636596 1552 ntBASIC23.21■■□□□ 1.31
KRT40Q6A162 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
KRT40Q6A162 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
KRT40Q6A162 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT40Q6A162 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT40Q6A162 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
KRT40Q6A162 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
KRT40Q6A162 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC23.2■■□□□ 1.3
KRT40Q6A162 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC23.2■■□□□ 1.3
KRT40Q6A162 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.2■■□□□ 1.3
KRT40Q6A162 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
KRT40Q6A162 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.2■■□□□ 1.3
KRT40Q6A162 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
KRT40Q6A162 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.2■■□□□ 1.3
KRT40Q6A162 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.2■■□□□ 1.3
KRT40Q6A162 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.2■■□□□ 1.3
KRT40Q6A162 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.2■■□□□ 1.3
KRT40Q6A162 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
KRT40Q6A162 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
KRT40Q6A162 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC23.2■■□□□ 1.3
KRT40Q6A162 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
KRT40Q6A162 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.19■■□□□ 1.3
KRT40Q6A162 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
KRT40Q6A162 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
KRT40Q6A162 MKRN4P-201ENST00000444706 1521 ntBASIC23.19■■□□□ 1.3
KRT40Q6A162 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
KRT40Q6A162 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.19■■□□□ 1.3
KRT40Q6A162 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 AL596275.1-201ENST00000423464 877 ntBASIC23.19■■□□□ 1.3
KRT40Q6A162 DUSP5P2-201ENST00000426873 1033 ntBASIC23.19■■□□□ 1.3
KRT40Q6A162 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.19■■□□□ 1.3
KRT40Q6A162 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.19■■□□□ 1.3
KRT40Q6A162 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
KRT40Q6A162 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
KRT40Q6A162 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.18■■□□□ 1.3
KRT40Q6A162 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.18■■□□□ 1.3
KRT40Q6A162 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
KRT40Q6A162 AL691432.2-201ENST00000607222 2038 ntBASIC23.18■■□□□ 1.3
KRT40Q6A162 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT40Q6A162 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT40Q6A162 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC23.17■■□□□ 1.3
KRT40Q6A162 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT40Q6A162 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
KRT40Q6A162 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.17■■□□□ 1.3
KRT40Q6A162 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.16■■□□□ 1.3
KRT40Q6A162 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.16■■□□□ 1.3
KRT40Q6A162 C2orf69P4-201ENST00000565394 541 ntBASIC23.16■■□□□ 1.3
KRT40Q6A162 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
KRT40Q6A162 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
KRT40Q6A162 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC23.16■■□□□ 1.3
KRT40Q6A162 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT40Q6A162 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
KRT40Q6A162 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC23.15■■□□□ 1.3
KRT40Q6A162 LSM12P1-201ENST00000411836 588 ntBASIC23.15■■□□□ 1.3
KRT40Q6A162 BX276092.2-201ENST00000417668 665 ntBASIC23.15■■□□□ 1.3
KRT40Q6A162 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.15■■□□□ 1.3
KRT40Q6A162 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
KRT40Q6A162 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
KRT40Q6A162 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
KRT40Q6A162 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
KRT40Q6A162 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms