Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 WWOX-216ENST00000569818 525 ntBASIC25.41■■□□□ 1.66
RC3H1Q5TC82 DGCR10-201ENST00000609839 495 ntBASIC25.41■■□□□ 1.66
RC3H1Q5TC82 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
RC3H1Q5TC82 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
RC3H1Q5TC82 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC25.41■■□□□ 1.66
RC3H1Q5TC82 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 PRR31-201ENST00000371629 978 ntTSL 2 BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RC3H1Q5TC82 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 AC233723.2-201ENST00000623798 2106 ntBASIC25.39■■□□□ 1.66
RC3H1Q5TC82 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 B3GAT3P1-201ENST00000471720 806 ntBASIC25.39■■□□□ 1.66
RC3H1Q5TC82 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
RC3H1Q5TC82 AC121338.2-201ENST00000622535 1744 ntBASIC25.39■■□□□ 1.65
RC3H1Q5TC82 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
RC3H1Q5TC82 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
RC3H1Q5TC82 KRT8P17-201ENST00000453110 1448 ntBASIC25.38■■□□□ 1.65
RC3H1Q5TC82 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 AC087388.1-201ENST00000571370 1112 ntBASIC25.38■■□□□ 1.65
RC3H1Q5TC82 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
RC3H1Q5TC82 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 LIN28AP1-201ENST00000429574 405 ntBASIC25.37■■□□□ 1.65
RC3H1Q5TC82 AC011506.1-201ENST00000474329 610 ntBASIC25.37■■□□□ 1.65
RC3H1Q5TC82 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
RC3H1Q5TC82 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 ECEL1P2-202ENST00000465689 757 ntBASIC25.36■■□□□ 1.65
RC3H1Q5TC82 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 AP006587.1-201ENST00000534129 1502 ntBASIC25.36■■□□□ 1.65
RC3H1Q5TC82 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
RC3H1Q5TC82 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RC3H1Q5TC82 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 H19-201ENST00000411754 1788 ntTSL 5 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 GUK1-204ENST00000366721 689 ntTSL 3 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 AC004980.1-204ENST00000429707 299 ntBASIC25.34■■□□□ 1.65
RC3H1Q5TC82 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RC3H1Q5TC82 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms