Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
PTCHD3Q3KNS1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PTCHD3Q3KNS1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 FAM201B-201ENST00000458407 597 ntBASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.58■□□□□ 0.72
PTCHD3Q3KNS1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.57■□□□□ 0.72
PTCHD3Q3KNS1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 AL589743.5-201ENST00000616611 1050 ntBASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.56■□□□□ 0.72
PTCHD3Q3KNS1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PTCHD3Q3KNS1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PTCHD3Q3KNS1 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms