Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC15.02■□□□□ -0
FOXA3P55318 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA3P55318 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.02□□□□□ -0.01
FOXA3P55318 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
FOXA3P55318 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA3P55318 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA3P55318 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
FOXA3P55318 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA3P55318 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
FOXA3P55318 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.02□□□□□ -0.01
FOXA3P55318 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA3P55318 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA3P55318 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.02□□□□□ -0.01
FOXA3P55318 AP004607.4-201ENST00000530158 1459 ntBASIC15.01□□□□□ -0.01
FOXA3P55318 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 UNC93B8-201ENST00000511903 705 ntBASIC15.01□□□□□ -0.01
FOXA3P55318 AC005332.8-201ENST00000622750 2735 ntBASIC15.01□□□□□ -0.01
FOXA3P55318 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
FOXA3P55318 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC15.01□□□□□ -0.01
FOXA3P55318 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
FOXA3P55318 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
FOXA3P55318 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC15□□□□□ -0.01
FOXA3P55318 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC15□□□□□ -0.01
FOXA3P55318 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15□□□□□ -0.01
FOXA3P55318 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC15□□□□□ -0.01
FOXA3P55318 MIR2861-201ENST00000636310 90 ntBASIC15□□□□□ -0.01
FOXA3P55318 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC15□□□□□ -0.01
FOXA3P55318 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
FOXA3P55318 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC15□□□□□ -0.01
FOXA3P55318 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
FOXA3P55318 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
FOXA3P55318 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA3P55318 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.99□□□□□ -0.01
FOXA3P55318 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
FOXA3P55318 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC14.99□□□□□ -0.01
FOXA3P55318 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
FOXA3P55318 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
FOXA3P55318 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
FOXA3P55318 AL691432.2-201ENST00000607222 2038 ntBASIC14.99□□□□□ -0.01
FOXA3P55318 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.98□□□□□ -0.01
FOXA3P55318 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA3P55318 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA3P55318 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms