Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CCNFP41002 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.12■□□□□ 0.81
CCNFP41002 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.12■□□□□ 0.81
CCNFP41002 AC007322.3-201ENST00000426526 701 ntBASIC20.12■□□□□ 0.81
CCNFP41002 AC007322.1-201ENST00000426983 750 ntBASIC20.12■□□□□ 0.81
CCNFP41002 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.12■□□□□ 0.81
CCNFP41002 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
CCNFP41002 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.12■□□□□ 0.81
CCNFP41002 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CCNFP41002 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCNFP41002 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 CNN2P6-201ENST00000439038 900 ntBASIC20.11■□□□□ 0.81
CCNFP41002 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.11■□□□□ 0.81
CCNFP41002 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.11■□□□□ 0.81
CCNFP41002 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.11■□□□□ 0.81
CCNFP41002 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.11■□□□□ 0.81
CCNFP41002 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.11■□□□□ 0.81
CCNFP41002 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.11■□□□□ 0.81
CCNFP41002 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CCNFP41002 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CCNFP41002 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCNFP41002 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.1■□□□□ 0.81
CCNFP41002 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCNFP41002 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.1■□□□□ 0.81
CCNFP41002 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNFP41002 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNFP41002 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCNFP41002 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCNFP41002 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCNFP41002 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.09■□□□□ 0.81
CCNFP41002 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCNFP41002 FAM21FP-204ENST00000608637 956 ntBASIC20.09■□□□□ 0.81
CCNFP41002 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCNFP41002 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNFP41002 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.09■□□□□ 0.81
CCNFP41002 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
CCNFP41002 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.09■□□□□ 0.81
CCNFP41002 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.09■□□□□ 0.81
CCNFP41002 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CCNFP41002 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCNFP41002 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNFP41002 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.08■□□□□ 0.81
CCNFP41002 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCNFP41002 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.08■□□□□ 0.81
CCNFP41002 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCNFP41002 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCNFP41002 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.08■□□□□ 0.81
CCNFP41002 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms