Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC15.24■□□□□ 0.03
HLA-DMBP28068 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 AC087289.5-201ENST00000586076 3175 ntBASIC15.24■□□□□ 0.03
HLA-DMBP28068 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HLA-DMBP28068 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 UQCRFS1P1-201ENST00000435169 820 ntBASIC15.23■□□□□ 0.03
HLA-DMBP28068 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC15.23■□□□□ 0.03
HLA-DMBP28068 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HLA-DMBP28068 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 AC116562.4-201ENST00000641316 2276 ntBASIC15.22■□□□□ 0.03
HLA-DMBP28068 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 H19-201ENST00000411754 1788 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.22■□□□□ 0.03
HLA-DMBP28068 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 BMP1-204ENST00000397814 836 ntTSL 4 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 BRI3-207ENST00000539286 699 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 BID-214ENST00000617586 542 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 TFG-210ENST00000620299 1289 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 GAS2L1P2-201ENST00000436355 1356 ntBASIC15.22■□□□□ 0.03
HLA-DMBP28068 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
HLA-DMBP28068 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC15.22■□□□□ 0.03
HLA-DMBP28068 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 KRT18P11-201ENST00000435214 1283 ntBASIC15.21■□□□□ 0.03
HLA-DMBP28068 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 SPI1-203ENST00000533030 661 ntTSL 2 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
HLA-DMBP28068 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
HLA-DMBP28068 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HLA-DMBP28068 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
HLA-DMBP28068 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HLA-DMBP28068 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HLA-DMBP28068 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms