Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
ATF4P18848 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ATF4P18848 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC16.69■□□□□ 0.26
ATF4P18848 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ATF4P18848 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
ATF4P18848 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
ATF4P18848 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
ATF4P18848 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
ATF4P18848 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
ATF4P18848 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 MIR638-201ENST00000385237 100 ntBASIC16.68■□□□□ 0.26
ATF4P18848 AL136116.3-201ENST00000402907 1138 ntBASIC16.68■□□□□ 0.26
ATF4P18848 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 AC133561.4-201ENST00000566112 224 ntBASIC16.68■□□□□ 0.26
ATF4P18848 TRIR-202ENST00000588213 841 ntTSL 3 BASIC16.68■□□□□ 0.26
ATF4P18848 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.68■□□□□ 0.26
ATF4P18848 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.68■□□□□ 0.26
ATF4P18848 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
ATF4P18848 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
ATF4P18848 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.67■□□□□ 0.26
ATF4P18848 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.67■□□□□ 0.26
ATF4P18848 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
ATF4P18848 C17orf82-201ENST00000623772 1530 ntBASIC16.67■□□□□ 0.26
ATF4P18848 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.67■□□□□ 0.26
ATF4P18848 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.67■□□□□ 0.26
ATF4P18848 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC16.67■□□□□ 0.26
ATF4P18848 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
ATF4P18848 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.67■□□□□ 0.26
ATF4P18848 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
ATF4P18848 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.67■□□□□ 0.26
ATF4P18848 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
ATF4P18848 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC16.67■□□□□ 0.26
ATF4P18848 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC16.66■□□□□ 0.26
ATF4P18848 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.66■□□□□ 0.26
ATF4P18848 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
ATF4P18848 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.66■□□□□ 0.26
ATF4P18848 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
ATF4P18848 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.66■□□□□ 0.26
ATF4P18848 AL356309.3-201ENST00000624132 1934 ntBASIC16.66■□□□□ 0.26
ATF4P18848 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
ATF4P18848 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
ATF4P18848 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
ATF4P18848 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.65■□□□□ 0.26
ATF4P18848 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
ATF4P18848 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 NALT1-201ENST00000429224 738 ntTSL 5 BASIC16.65■□□□□ 0.26
ATF4P18848 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.65■□□□□ 0.26
ATF4P18848 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 OR6D1P-202ENST00000641007 5290 ntBASIC16.65■□□□□ 0.26
ATF4P18848 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
ATF4P18848 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms