Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MYL6B-208ENST00000550550 322 ntTSL 218.08■□□□□ 0.481e-6■■■□□ 15.9
YBX3P16989 MYL6B-210ENST00000552568 703 ntTSL 5 BASIC15.86■□□□□ 0.131e-6■■■□□ 15.9
YBX3P16989 MYL6B-204ENST00000549178 971 ntTSL 515.86■□□□□ 0.131e-6■■■□□ 15.9
YBX3P16989 MYL6B-207ENST00000550443 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.131e-6■■■□□ 15.9
YBX3P16989 MYL6B-211ENST00000553066 1305 ntAPPRIS P1 TSL 3 BASIC14.96□□□□□ -0.011e-6■■■□□ 15.9
YBX3P16989 MYL6B-203ENST00000548571 223 ntTSL 411.79□□□□□ -0.521e-6■■■□□ 15.9
YBX3P16989 AC084033.3-203ENST00000546580 571 ntTSL 2 BASIC15.92■□□□□ 0.148e-7■■■□□ 15.9
YBX3P16989 AC084033.3-201ENST00000551421 451 ntTSL 2 BASIC9.28□□□□□ -0.928e-7■■■□□ 15.9
YBX3P16989 AC084033.3-202ENST00000547492 759 ntTSL 28.03□□□□□ -1.128e-7■■■□□ 15.9
YBX3P16989 NBAS-208ENST00000442506 4391 ntTSL 1 (best)11.26□□□□□ -0.613e-7■■■□□ 15.9
YBX3P16989 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.21■■■□□ 2.431e-10■■■□□ 15.9
YBX3P16989 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.581e-10■■■□□ 15.9
YBX3P16989 LSM4-206ENST00000600289 1113 ntTSL 221.8■■□□□ 1.081e-10■■■□□ 15.9
YBX3P16989 UCP2-208ENST00000544615 1004 ntTSL 214.57□□□□□ -0.084e-9■■■□□ 15.9
YBX3P16989 UCP2-209ENST00000545212 389 ntTSL 312.65□□□□□ -0.384e-9■■■□□ 15.9
YBX3P16989 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.174e-9■■■□□ 15.9
YBX3P16989 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.188e-7■■■□□ 15.9
YBX3P16989 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC7.51□□□□□ -1.218e-7■■■□□ 15.9
YBX3P16989 TGFBR3-209ENST00000532540 3913 ntTSL 1 (best)7.43□□□□□ -1.228e-7■■■□□ 15.9
YBX3P16989 TGFBR3-207ENST00000525962 3927 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.288e-7■■■□□ 15.9
YBX3P16989 TGFBR3-210ENST00000533089 6455 ntTSL 1 (best)6.87□□□□□ -1.318e-7■■■□□ 15.9
YBX3P16989 MED24-205ENST00000422942 905 ntTSL 1 (best)20.64■□□□□ 0.893e-7■■■□□ 15.9
YBX3P16989 MED24-210ENST00000492176 776 ntTSL 215.68■□□□□ 0.13e-7■■■□□ 15.9
YBX3P16989 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.026e-12■■■□□ 15.9
YBX3P16989 SNU13-202ENST00000355257 1503 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.166e-12■■■□□ 15.9
YBX3P16989 CTDSP2-202ENST00000547169 1340 ntTSL 219.77■□□□□ 0.768e-8■■■□□ 15.9
YBX3P16989 SEC14L1-205ENST00000443798 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.322e-6■■■□□ 15.9
YBX3P16989 SEC14L1-204ENST00000436233 5295 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.42e-6■■■□□ 15.9
YBX3P16989 SEC14L1-202ENST00000430767 5283 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.442e-6■■■□□ 15.9
YBX3P16989 SEC14L1-201ENST00000392476 2957 ntAPPRIS ALT1 TSL 2 BASIC10.82□□□□□ -0.682e-6■■■□□ 15.9
YBX3P16989 WDR5-203ENST00000608937 705 ntTSL 227.25■■□□□ 1.952e-6■■■□□ 15.9
YBX3P16989 GRB10-212ENST00000439044 733 ntTSL 527.64■■■□□ 2.021e-6■■■□□ 15.9
YBX3P16989 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.95■■□□□ 1.11e-6■■■□□ 15.9
YBX3P16989 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.631e-6■■■□□ 15.9
YBX3P16989 GRB10-210ENST00000407526 2279 ntTSL 1 (best) BASIC11.75□□□□□ -0.531e-6■■■□□ 15.9
YBX3P16989 GRB10-209ENST00000406641 2700 ntTSL 5 BASIC9.17□□□□□ -0.941e-6■■■□□ 15.9
YBX3P16989 EIF4G1-208ENST00000413967 2808 ntTSL 219.52■□□□□ 0.714e-9■■■□□ 15.9
YBX3P16989 EIF4G1-213ENST00000426123 2907 ntTSL 215.78■□□□□ 0.124e-9■■■□□ 15.9
YBX3P16989 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.82■■□□□ 1.241e-6■■■□□ 15.9
YBX3P16989 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21e-6■■■□□ 15.9
YBX3P16989 ANKMY2-204ENST00000453623 587 ntTSL 413.15□□□□□ -0.31e-6■■■□□ 15.9
YBX3P16989 ANKMY2-203ENST00000447802 2599 ntTSL 211.46□□□□□ -0.581e-6■■■□□ 15.9
YBX3P16989 QARS-225ENST00000634336 486 ntTSL 514.76□□□□□ -0.051e-15■■■□□ 15.9
YBX3P16989 QARS-224ENST00000497635 386 ntTSL 314.44□□□□□ -0.11e-15■■■□□ 15.9
YBX3P16989 QARS-229ENST00000634473 643 ntTSL 512.66□□□□□ -0.381e-15■■■□□ 15.9
YBX3P16989 QARS-223ENST00000494984 679 ntTSL 212.07□□□□□ -0.481e-15■■■□□ 15.9
YBX3P16989 QARS-210ENST00000466179 334 ntTSL 35.98□□□□□ -1.451e-15■■■□□ 15.9
YBX3P16989 SLC38A5-204ENST00000440085 910 ntTSL 317.01■□□□□ 0.312e-11■■■□□ 15.9
YBX3P16989 SLC38A5-205ENST00000441948 871 ntTSL 516.94■□□□□ 0.32e-11■■■□□ 15.9
YBX3P16989 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.335e-7■■■□□ 15.9
YBX3P16989 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC27.47■■□□□ 1.995e-6■■■□□ 15.9
YBX3P16989 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.875e-6■■■□□ 15.9
YBX3P16989 SPG21-213ENST00000561078 1520 ntTSL 519.3■□□□□ 0.685e-6■■■□□ 15.9
YBX3P16989 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.415e-6■■■□□ 15.9
YBX3P16989 SPG21-209ENST00000559199 2059 ntTSL 2 BASIC12.31□□□□□ -0.445e-6■■■□□ 15.9
YBX3P16989 PSMC5-207ENST00000580063 562 ntTSL 217.16■□□□□ 0.342e-8■■■□□ 15.9
YBX3P16989 PSMC5-219ENST00000584880 597 ntTSL 314.64□□□□□ -0.072e-8■■■□□ 15.9
YBX3P16989 BCOR-202ENST00000378444 6358 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.522e-7■■■□□ 15.9
YBX3P16989 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.742e-7■■■□□ 15.9
YBX3P16989 BCOR-201ENST00000342274 6390 ntAPPRIS P3 TSL 5 BASIC10.45□□□□□ -0.742e-7■■■□□ 15.9
YBX3P16989 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.942e-7■■■□□ 15.9
YBX3P16989 GSTO1-204ENST00000445155 829 ntTSL 228.94■■■□□ 2.221e-7■■■□□ 15.9
YBX3P16989 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.311e-7■■■□□ 15.9
YBX3P16989 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC22.13■■□□□ 1.131e-7■■■□□ 15.9
YBX3P16989 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC21.04■□□□□ 0.961e-7■■■□□ 15.9
YBX3P16989 GSTO1-206ENST00000493946 874 ntTSL 214.87□□□□□ -0.031e-7■■■□□ 15.9
YBX3P16989 GSTO1-203ENST00000432659 592 ntTSL 26.18□□□□□ -1.421e-7■■■□□ 15.9
YBX3P16989 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.751e-6■■■□□ 15.9
YBX3P16989 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.62■■■□□ 2.012e-7■■■□□ 15.9
YBX3P16989 SNAP23-216ENST00000568331 557 ntTSL 427.5■■□□□ 1.992e-7■■■□□ 15.9
YBX3P16989 SNAP23-213ENST00000566327 568 ntTSL 425.68■■□□□ 1.72e-7■■■□□ 15.9
YBX3P16989 SNAP23-221ENST00000568859 565 ntTSL 422.67■■□□□ 1.222e-7■■■□□ 15.9
YBX3P16989 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.02■□□□□ 0.962e-7■■■□□ 15.9
YBX3P16989 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.472e-7■■■□□ 15.9
YBX3P16989 SNAP23-211ENST00000566035 846 ntTSL 310.95□□□□□ -0.662e-7■■■□□ 15.9
YBX3P16989 SNAP23-204ENST00000561526 565 ntTSL 48.66□□□□□ -1.022e-7■■■□□ 15.9
YBX3P16989 SNAP23-217ENST00000568451 573 ntTSL 46.48□□□□□ -1.372e-7■■■□□ 15.9
YBX3P16989 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC5.88□□□□□ -1.472e-7■■■□□ 15.9
YBX3P16989 SNAP23-207ENST00000563765 855 ntTSL 35.87□□□□□ -1.472e-7■■■□□ 15.9
YBX3P16989 SNAP23-218ENST00000568514 1018 ntTSL 35.32□□□□□ -1.562e-7■■■□□ 15.9
YBX3P16989 FAM189B-203ENST00000368366 1962 ntTSL 1 (best)24.69■■□□□ 1.542e-7■■■□□ 15.9
YBX3P16989 AREL1-202ENST00000469797 2196 ntTSL 515.51■□□□□ 0.078e-6■■■□□ 15.9
YBX3P16989 AREL1-212ENST00000556202 2639 ntTSL 513.42□□□□□ -0.268e-6■■■□□ 15.9
YBX3P16989 AREL1-201ENST00000356357 5456 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.478e-6■■■□□ 15.9
YBX3P16989 AREL1-216ENST00000557401 3598 ntTSL 511.03□□□□□ -0.648e-6■■■□□ 15.9
YBX3P16989 AREL1-211ENST00000555330 4855 ntTSL 58.53□□□□□ -1.048e-6■■■□□ 15.9
YBX3P16989 NDUFS8-213ENST00000531282 536 ntTSL 225.3■■□□□ 1.649e-14■■■□□ 15.9
YBX3P16989 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC24.8■■□□□ 1.564e-8■■■□□ 15.9
YBX3P16989 TMEM167B-202ENST00000473828 964 ntTSL 215.37■□□□□ 0.052e-6■■■□□ 15.9
YBX3P16989 TMEM167B-203ENST00000479160 897 ntTSL 38.44□□□□□ -1.062e-6■■■□□ 15.9
YBX3P16989 TEX10-201ENST00000374902 3074 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.642e-6■■■□□ 15.9
YBX3P16989 TEX10-204ENST00000535814 3006 ntTSL 2 BASIC10.23□□□□□ -0.772e-6■■■□□ 15.9
YBX3P16989 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.352e-6■■■□□ 15.9
YBX3P16989 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.362e-6■■■□□ 15.9
YBX3P16989 NF1-205ENST00000456735 7787 ntTSL 56.08□□□□□ -1.442e-6■■■□□ 15.9
YBX3P16989 NF1-219ENST00000579081 8788 ntTSL 1 (best)5.12□□□□□ -1.592e-6■■■□□ 15.9
YBX3P16989 SLBP-204ENST00000483348 1030 ntTSL 321.24■□□□□ 0.992e-8■■■□□ 15.9
YBX3P16989 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.712e-6■■■□□ 15.9
YBX3P16989 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.482e-6■■■□□ 15.9
YBX3P16989 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.312e-6■■■□□ 15.9
Retrieved 100 of 29,075 protein–RNA pairs in 675.2 ms